Scaffold Ga0114341_10059676

Overview

Basic Information

• Taxon OID: 3300008108
• Scaffold ID: Ga0114341_10059676
• Source Dataset Name: Freshwater microbial communities from Harmful Algal Blooms in Lake Erie, Western Basin, USA - Station WLE12, Sample E2014-0048-C-NA
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: University of Michigan
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3707
• Total Scaffold Genes: 13
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (15.38%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater, Plankton → Harmful Algal Blooms In Lake Erie

Source Dataset Sampling Location

• Location Name: Lake Erie, USA
• Coordinates
  • Lat. (^o): 41.7026
  • Long. (^o): -83.2538
  • Depth (m): 6

Associated Families

Family	Category	Number of Sequences	3D Structure?
F010321	Metagenome / Metatranscriptome	305	Y
F012573	Metagenome / Metatranscriptome	279	Y
F054035	Metagenome / Metatranscriptome	140	N
F065783	Metagenome / Metatranscriptome	127	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0114341_100596762	F012573	N/A	MSNQTKDWMERLAKNYKLPEEQPKQKKEPVSLLKESQLKIIMGRDKKDLVGKK*
Ga0114341_100596764	F054035	N/A	MANNILRGTKRKEYTTERVRKMRMQRELTKAKTDGVSDSQVQHYLGKLQAAGHMKVNGFRSMNLEQEGIVDSFTNESGGVKKTIKLEYQMYNKNGMDDRPHFDGYLCSASEVDKRYKLKGWFNEDGTIRIELVN*
Ga0114341_100596767	F065783	N/A	MEELIKLESMNVWVDSNGVYQPNADGTPNVEDIKLYKDINPDWYQNLSSDDREQISIIINNKTNN*
Ga0114341_100596769	F010321	N/A	MELDPIQQSELERLNKALANQSLQPDDVKKLREKKFNPKTGELQLFVDNGKGGVKMAAVNIFE*