Scaffold Ga0114341_10059387

Overview

Basic Information

• Taxon OID: 3300008108
• Scaffold ID: Ga0114341_10059387
• Source Dataset Name: Freshwater microbial communities from Harmful Algal Blooms in Lake Erie, Western Basin, USA - Station WLE12, Sample E2014-0048-C-NA
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: University of Michigan
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2450
• Total Scaffold Genes: 8
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 7 (87.50%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (80.00%)
• Associated Families: 5

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater, Plankton → Harmful Algal Blooms In Lake Erie

Source Dataset Sampling Location

• Location Name: Lake Erie, USA
• Coordinates
  • Lat. (^o): 41.7026
  • Long. (^o): -83.2538
  • Depth (m): 6

Associated Families

Family	Category	Number of Sequences	3D Structure?
F006653	Metagenome / Metatranscriptome	367	Y
F009331	Metagenome / Metatranscriptome	319	Y
F028460	Metagenome / Metatranscriptome	191	Y
F057100	Metagenome / Metatranscriptome	136	Y
F093487	Metagenome / Metatranscriptome	106	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0114341_100593871	F028460	N/A	VMVLHHVSEQSEYGSPSNPPHRRAIHGKVSQLPALILTLGYDPSQGILKVAPVKNRFGEHTADGSKYAQLLVNYAAVQISDQNEFGWMLRKDTIAGYQGGYNV*
Ga0114341_100593872	F006653	AGGAGG	MSEQLSNKYRDNIKVDGLRAELDAIKVDLTNFVGALLQSGVVELVKDEEGNIIYKINKVVLVDEQPEV*
Ga0114341_100593874	F093487	AGGA	MVKGEAVMAVAIRTLRRRRRTAQRGKSMSQSQRWGKVVTTMPVPGGEITTTEILVPVVEEVVETTEEETKDEA*
Ga0114341_100593876	F009331	AGGA	MICQNCHKAGEENTLTHYKRSAQWHDKCDDKGCVCQHKTGPGYVKRDGTKVPLMQTQSP*
Ga0114341_100593878	F057100	GGA	MYDNDKARVGHDDTDFAAFGLSHLRDQYGNRDNTLAPYTDKVNDAFIADVWRIMDQAGNLLVRKHHDYGPKNIAHSPG