Basic Information | |
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Taxon OID | 3300008108 Open in IMG/M |
Scaffold ID | Ga0114341_10046489 Open in IMG/M |
Source Dataset Name | Freshwater microbial communities from Harmful Algal Blooms in Lake Erie, Western Basin, USA - Station WLE12, Sample E2014-0048-C-NA |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | University of Michigan |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 2851 |
Total Scaffold Genes | 10 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 7 (70.00%) |
Novel Protein Genes | 3 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 2 (66.67%) |
Associated Families | 3 |
Taxonomy | |
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All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage | (Source: UniRef50) |
Source Dataset Ecosystem |
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Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater, Plankton → Harmful Algal Blooms In Lake Erie |
Source Dataset Sampling Location | ||||||||
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Location Name | Lake Erie, USA | |||||||
Coordinates | Lat. (o) | 41.7026 | Long. (o) | -83.2538 | Alt. (m) | Depth (m) | 6 | Location on Map |
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Family | Category | Number of Sequences | 3D Structure? |
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F002207 | Metagenome / Metatranscriptome | 583 | Y |
F014250 | Metagenome / Metatranscriptome | 264 | Y |
F041724 | Metagenome / Metatranscriptome | 159 | Y |
Protein ID | Family | RBS | Sequence |
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Ga0114341_100464891 | F041724 | N/A | SFLDKENAEIVAITYTEIGDHLFEQWHNSNLDEGTFWADYQIALMCDSNYLKGRFNQFYNLTPDEDEYIEWDEEA* |
Ga0114341_1004648910 | F002207 | AGGA | MPNWVYNTLTIQGPKSEIDSIKDRLNKPFTLAQETFGMGDISTSGFPTKITQVTYSNPVFAFFNIHSYKDDGITDEEYACQPDRGGINMDDPDWFRKSIEFAKTQK |
Ga0114341_100464895 | F014250 | GGAGG | MIMSDELSPHLQKLVDMGLTGVDIMHGELKNLMYEAEQEYITWQKVEEDTGYDDAMDSMERKYWEGQLDALTHMYQLTYNLVFAINERENK* |
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