Scaffold Ga0114341_10046489

Overview

Basic Information

• Taxon OID: 3300008108
• Scaffold ID: Ga0114341_10046489
• Source Dataset Name: Freshwater microbial communities from Harmful Algal Blooms in Lake Erie, Western Basin, USA - Station WLE12, Sample E2014-0048-C-NA
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: University of Michigan
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2851
• Total Scaffold Genes: 10
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 7 (70.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater, Plankton → Harmful Algal Blooms In Lake Erie

Source Dataset Sampling Location

• Location Name: Lake Erie, USA
• Coordinates
  • Lat. (^o): 41.7026
  • Long. (^o): -83.2538
  • Depth (m): 6

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002207	Metagenome / Metatranscriptome	583	Y
F014250	Metagenome / Metatranscriptome	264	Y
F041724	Metagenome / Metatranscriptome	159	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0114341_100464891	F041724	N/A	SFLDKENAEIVAITYTEIGDHLFEQWHNSNLDEGTFWADYQIALMCDSNYLKGRFNQFYNLTPDEDEYIEWDEEA*
Ga0114341_1004648910	F002207	AGGA	MPNWVYNTLTIQGPKSEIDSIKDRLNKPFTLAQETFGMGDISTSGFPTKITQVTYSNPVFAFFNIHSYKDDGITDEEYACQPDRGGINMDDPDWFRKSIEFAKTQK
Ga0114341_100464895	F014250	GGAGG	MIMSDELSPHLQKLVDMGLTGVDIMHGELKNLMYEAEQEYITWQKVEEDTGYDDAMDSMERKYWEGQLDALTHMYQLTYNLVFAINERENK*