Scaffold Ga0114341_10044152

Overview

Basic Information

• Taxon OID: 3300008108
• Scaffold ID: Ga0114341_10044152
• Source Dataset Name: Freshwater microbial communities from Harmful Algal Blooms in Lake Erie, Western Basin, USA - Station WLE12, Sample E2014-0048-C-NA
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: University of Michigan
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 5901
• Total Scaffold Genes: 12
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 10 (83.33%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 5 (100.00%)
• Associated Families: 5

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater, Plankton → Harmful Algal Blooms In Lake Erie

Source Dataset Sampling Location

• Location Name: Lake Erie, USA
• Coordinates
  • Lat. (^o): 41.7026
  • Long. (^o): -83.2538
  • Depth (m): 6

Associated Families

Family	Category	Number of Sequences	3D Structure?
F008616	Metagenome / Metatranscriptome	330	Y
F008811	Metagenome / Metatranscriptome	327	N
F018353	Metagenome	235	N
F023328	Metagenome	210	N
F028786	Metagenome / Metatranscriptome	190	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0114341_1004415211	F008616	AGG	MLKLKLSWELETGEKFDEWTRPIELAMAEKELYNSKSIVKILMEENTPSNSLLLFLGHKIQQRVTKKIESFDTWKIKVVSIAASDFETANFTKPEASGE*
Ga0114341_1004415212	F008811	AGGA	MATTILSGRQLTLSVNGNSYSEQITSSAINFETERLTFDTLAGKAYKYIDSNVTLDIEFLNDVGATPNSLYKVLWDGTESAPDTTIAFIMTLRTGVTLTGLVLPQYPSITGSGADVQTCSVSLQVVGIPTEDLTA*
Ga0114341_100441522	F018353	AGG	MSKPKAKKQTIELPDVMASELVRIVNTAHEDGKLITGFVCVMEVFDGKKKTIKIASNADMPQHSVFGMINYAAEKYQFTLAPDEDEDDDFYDPEWFDGQ*
Ga0114341_100441524	F028786	AGAAG	MQSFNHKQFSLAAIAFLAAWQATDFALDYRAVLGAVVAASMGAMNPNVKTKVK*
Ga0114341_100441528	F023328	AGG	MTVYTPTYRVTIAGTVQTTEIISGGTITYGRNDFFEATQPSYCNIELLNLDGASPVLNLDGASPVVELLDPVIIEVTNSAGTYVKLFTGEVSGVYNRLEAAGANGKPNTLQIQAIGALGLLVKRTAGAISYPEELDGARIQRILEETLFIAWEDLSNTQTWDDFTTETWANYGVQGIDTIDPGRYEVLARTAEIQQAYILTDETQQSGLGYLYDTTDFEIGYADAERRITNYSDNLIELDANLANADIQTRLQTADIVNSVVIQYDDPILEEAAQNDSSINDYGLLQEIRNTILAQQIDAQEQAVNFVNFRGTPRTSLEEVSVNLANDAMTNTVRDDLLAVSMDTLLYVDNIPVGLISSGFFEGFVEGWTWTLGRRNLELTMSVSNSIYSTLDVQWEDYNPLTQWQNLDNTTMWLDVI*