Scaffold Ga0114341_10030259

Overview

Basic Information

• Taxon OID: 3300008108
• Scaffold ID: Ga0114341_10030259
• Source Dataset Name: Freshwater microbial communities from Harmful Algal Blooms in Lake Erie, Western Basin, USA - Station WLE12, Sample E2014-0048-C-NA
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: University of Michigan
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 10556
• Total Scaffold Genes: 33
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 24 (72.73%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 5 (100.00%)
• Associated Families: 5

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater, Plankton → Harmful Algal Blooms In Lake Erie

Source Dataset Sampling Location

• Location Name: Lake Erie, USA
• Coordinates
  • Lat. (^o): 41.7026
  • Long. (^o): -83.2538
  • Depth (m): 6

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000325	Metagenome / Metatranscriptome	1296	Y
F006543	Metagenome / Metatranscriptome	370	Y
F012108	Metagenome / Metatranscriptome	283	Y
F036210	Metagenome / Metatranscriptome	170	Y
F053106	Metagenome / Metatranscriptome	141	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0114341_100302592	F036210	GAGG	MKNRVITEHNRVEIQHKYIDHILGSLDFMEIKDRLRDYLEFEKTIESNAALEAEIRHEAPDILVDNWEDMKEPATLTKGRK*
Ga0114341_1003025925	F053106	GGAG	MAKYYVKSGTLEVVLSKKDALEAAIGGLLLTNKFDTIDEHFYCDERGYRDYVSADKETNVIPTKSIVRAAGWELSRDDD*
Ga0114341_1003025927	F000325	GGAG	MKVADGNEKLGKGCVVVSRPVGDTCPPDCDYLDNGCYAENSEKIYPGVRPAAMQNLVTEKNKIRSMILDAMRREKSIRWHERGDWFLNGELDLDYLANVTWACESILAEGKTLPDMWFYTHIYDSRLVSLEKYMNVYASVHDDNDMGEAMSQGFKLFAWCDSDEKIATKRPRSKAKADAWRKTLPKLVVLNGTKFVTCPEIRRGRGVVTCTPTKGSVSCELCVKGLGNVLFPSH*
Ga0114341_1003025931	F006543	GGAGG	MQKFAFSVDVVADELDRDAVAESIRECLSASLPDDVHASVKAGEVKAFSEQGYKVWRARVTGVTAEAAGDAANPKKSKKETVEV*
Ga0114341_1003025932	F012108	AGG	MINLQLSVREAMNLATNCNHEIYERIVNAFEVALGVNQLKVVTITGGMNLDNRIPCIKAIRLHTGWGLKEAKEWTDFLVGGWKYDKWNPAPAGTKQSITLKTPEAAENLLRDLVGLGCEGFLS*