Scaffold Ga0114341_10023381

Overview

Basic Information

• Taxon OID: 3300008108
• Scaffold ID: Ga0114341_10023381
• Source Dataset Name: Freshwater microbial communities from Harmful Algal Blooms in Lake Erie, Western Basin, USA - Station WLE12, Sample E2014-0048-C-NA
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: University of Michigan
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 4330
• Total Scaffold Genes: 12
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (25.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater, Plankton → Harmful Algal Blooms In Lake Erie

Source Dataset Sampling Location

• Location Name: Lake Erie, USA
• Coordinates
  • Lat. (^o): 41.7026
  • Long. (^o): -83.2538
  • Depth (m): 6

Associated Families

Family	Category	Number of Sequences	3D Structure?
F005090	Metagenome / Metatranscriptome	412	N
F011075	Metagenome / Metatranscriptome	295	Y
F011392	Metagenome / Metatranscriptome	291	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0114341_100233812	F011075	N/A	MFERNLGIVVGSHLNDAMIEISINPQLAGKRLKFVKALTFFNEDLTKGVTDDYLNWLWNELFENQRWGGPYVKGTNYETK*
Ga0114341_100233813	F011392	AGGA	MKQNNKNKNMNLSIKELNELIYSLGITAHNGNFCNREVNESLLERLYFELNEKIAGEAVDEEIEEDVDNFRSDTYFVSNEEADEDYRLSLLQDSDRYESSVSKDYDNHLKNLRERGYVTQVLLDYVDKKGAVSHGELESYYKSITGSNSFSHILANLRIPYKNRKTQRYVAKEGKRYSDAKYIIKVANPSNWVEVDY*
Ga0114341_100233814	F005090	N/A	MKKKIKFVWCGVNFELPAECLRTTDYWGKTLDNPYISIGRKECPAIAKQFMKAKYPHLLVWGSSETFANGNSATINVCNADGSDLDLNSKEWNEINSFVRQMSGGRYDGWSESYEYGEPGKSDNGTKLDFGTKYLHVENKAPFGTWPDVVRMLRAMVAGEYVWGPISLDKAIEKVRDYKVTESTIKKALELV*