Scaffold Ga0114341

Basic Information
Taxon OID	3300008108 Open in IMG/M
Scaffold ID	Ga0114341_10022242 Open in IMG/M
Source Dataset Name	Freshwater microbial communities from Harmful Algal Blooms in Lake Erie, Western Basin, USA - Station WLE12, Sample E2014-0048-C-NA
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	University of Michigan
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

Scaffold ID

Source Dataset Name

Freshwater microbial communities from Harmful Algal Blooms in Lake Erie, Western Basin, USA - Station WLE12, Sample E2014-0048-C-NA

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

University of Michigan

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	4464
Total Scaffold Genes	10 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	1 (10.00%)
Novel Protein Genes	5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (20.00%)
Associated Families	5

Scaffold Components

Scaffold Length (bps)

4464

Total Scaffold Genes

10 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

1 (10.00%)

Novel Protein Genes

5 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

1 (20.00%)

Associated Families

Taxonomy
All Organisms → cellular organisms → Bacteria	(Source: UniRef50)

Taxonomy

All Organisms → cellular organisms → Bacteria

(Source: UniRef50)

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater, Plankton → Harmful Algal Blooms In Lake Erie

Source Dataset Ecosystem

Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater, Plankton → Harmful Algal Blooms In Lake Erie

Source Dataset Sampling Location
Location Name	Lake Erie, USA
Coordinates	Lat. (^o)	41.7026	Long. (^o)	-83.2538	Alt. (m)	Depth (m)	6
Location on Map

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Source Dataset Sampling Location

Location Name

Lake Erie, USA

Coordinates

Lat. (^o)

41.7026

Long. (^o)

-83.2538

Alt. (m)

Depth (m)

Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F000716	Metagenome / Metatranscriptome	923	Y
F010462	Metagenome / Metatranscriptome	303	Y
F022861	Metagenome / Metatranscriptome	212	Y
F042298	Metagenome / Metatranscriptome	158	Y
F076942	Metagenome / Metatranscriptome	117	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0114341_1002224210	F010462	N/A	MPVMLYQLPNGKVIHLTIEEFLDLADQDIQYLMSIDFGEHIRDPFTGSAVEKNTREKYIDIEFLPMEDYDLNDIPSDESPFDDIIDLEDPLDN*
Ga0114341_100222422	F042298	N/A	MGRMKEAYIQIMNENGGIPEDMTLGDMLRMKELNIYHWQEYERAQERARLQSNKQTDLGETAKDSEGKSIRREENN*
Ga0114341_100222424	F022861	AGTAG	MRAICIDASNRPSKVPDSEWIVEGEVYTITRVVRMGLQDNKFGVLLKEVKLSAESFPYELYDAERFLPLDLLSQAFTETKETVKEADLELI*
Ga0114341_100222428	F000716	N/A	MEKLKQEIRNYQLNAGKTYMQYEQDKYSIYQNYLYKRALYGLDSLTEKELTAMCGKKKQRILNVYKRAQNVLNIFKQKVAIKYTNDIFKSLFPNSDLTKEIVSFDYTDEKFKNTLTFKDLNIGKDQIISIFIAEGILPKNFLSLKEAPVSLPSLKNESQA*
Ga0114341_100222429	F076942	N/A	MNSKVIVTADPTTNSVINVSKNKPEWGYIRVEQVRTMIDDNGFLKRKSVSAIVPALLEDLQASGFFAGQQLEGKIIVEESLEPFNEKTPERDLKIAGETGVVCTLGGLPIYRRTKFSFDGNVSDTLIKHDNVDQLRAAYANASKANTSAIQNAAGQDFNI*

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0114341_10022242

Overview

Ecosystem & Geography

Associated Families

Sequences