Scaffold Ga0114341_10020848

Overview

Basic Information

• Taxon OID: 3300008108
• Scaffold ID: Ga0114341_10020848
• Source Dataset Name: Freshwater microbial communities from Harmful Algal Blooms in Lake Erie, Western Basin, USA - Station WLE12, Sample E2014-0048-C-NA
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: University of Michigan
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 8735
• Total Scaffold Genes: 11
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 9 (81.82%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (100.00%)
• Associated Families: 2

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater, Plankton → Harmful Algal Blooms In Lake Erie

Source Dataset Sampling Location

• Location Name: Lake Erie, USA
• Coordinates
  • Lat. (^o): 41.7026
  • Long. (^o): -83.2538
  • Depth (m): 6

Associated Families

Family	Category	Number of Sequences	3D Structure?
F067726	Metagenome	125	Y
F103251	Metagenome	101	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0114341_100208483	F103251	GAGG	MQIQGLESTLKVLKTVQPEVKKQFFKDAKQIVKPAVDEAKNAYRSDYLSGMTRAWAPGGRPIFPWNQASAKRGVGVSTSLSKKQDAILTIVQKDAAAAIFDIAGKSTSNRFGNALNAFDTPSRVMWRSYEQHSGAIEAEMSKSVDEVMDRITELQKAVFL*
Ga0114341_100208486	F067726	AGGA	MMDRYVITSTRVGVIGTAFVAGPSDDIDWLIAGGFIQRSDTHPSKGAKLAKKPDATDSQE