Scaffold Ga0114341_10009510

Overview

Basic Information

• Taxon OID: 3300008108
• Scaffold ID: Ga0114341_10009510
• Source Dataset Name: Freshwater microbial communities from Harmful Algal Blooms in Lake Erie, Western Basin, USA - Station WLE12, Sample E2014-0048-C-NA
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: University of Michigan
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 7600
• Total Scaffold Genes: 22
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (13.64%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (40.00%)
• Associated Families: 5

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater, Plankton → Harmful Algal Blooms In Lake Erie

Source Dataset Sampling Location

• Location Name: Lake Erie, USA
• Coordinates
  • Lat. (^o): 41.7026
  • Long. (^o): -83.2538
  • Depth (m): 6

Associated Families

Family	Category	Number of Sequences	3D Structure?
F010321	Metagenome / Metatranscriptome	305	Y
F011583	Metagenome	289	Y
F012573	Metagenome / Metatranscriptome	279	Y
F020497	Metagenome	223	Y
F054035	Metagenome / Metatranscriptome	140	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0114341_1000951010	F010321	N/A	MDILDQKQQEELERLNRALVSQSLQPEDRKLLNRKLFNPKTGELQLFTDNEKGGVKLSSINLFGD*
Ga0114341_1000951012	F020497	GAG	MKELIKLESINVWAGPLGIMNCDDSGLPILEESKSWDTIEPEWFQHLSNEDKDLVNTIINNNKNNKD*
Ga0114341_1000951014	F054035	N/A	MRFAGTKRSQYTTERVRKMRMERALVKAKKDGVSNEQVQHYLGKLQAAGHMKVEGFRSMNIEQNMLADAFSKSLGMTGVTKTIKLEYELYNAKGMDDKPHFSGYLRSASEVDKQYRLKGWFNEDGTIRLELVN*
Ga0114341_1000951016	F012573	GGA	MNKDTTKDWMDKLVKNYRIPDEQPKEKKEPIRMLKESQLRIIMERDKKDLDKKK*
Ga0114341_1000951021	F011583	N/A	MKRNYYEFWAKRFMKDGLKAIKLIIGLGLAFSFGYSVNLPIGILFFGWVLVEALLDKN*