Scaffold Ga0114341_10008128

Overview

Basic Information

• Taxon OID: 3300008108
• Scaffold ID: Ga0114341_10008128
• Source Dataset Name: Freshwater microbial communities from Harmful Algal Blooms in Lake Erie, Western Basin, USA - Station WLE12, Sample E2014-0048-C-NA
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: University of Michigan
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 8400
• Total Scaffold Genes: 13
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (23.08%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 4

Taxonomy: All Organisms → cellular organisms → Archaea → unclassified Archaea → archaeon (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater, Plankton → Harmful Algal Blooms In Lake Erie

Source Dataset Sampling Location

• Location Name: Lake Erie, USA
• Coordinates
  • Lat. (^o): 41.7026
  • Long. (^o): -83.2538
  • Depth (m): 6

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002092	Metagenome / Metatranscriptome	594	Y
F004154	Metagenome / Metatranscriptome	450	Y
F005349	Metagenome / Metatranscriptome	403	Y
F038676	Metagenome	165	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0114341_1000812810	F005349	N/A	MYVIHKQLIPTDANVGDPNWAKRQIWVLKLNPNDTIDEFESLEDAEVKKNELISSDPTGRIYKISIKNEDGSFSDT*
Ga0114341_1000812811	F004154	N/A	MSKVRYYILRYWVAVIFLGLAFYFYEPHQSITHCSPNSLITDVEPKTLLGLGEMSWMWILMAIAHSANTCYCDIKSLLKKR*
Ga0114341_1000812813	F002092	N/A	QKALDYLKSNPIVAKFIEKLDNERKEYYDKASMPNQYKPVVVEVGNKFIRIWHGSSCWGFISRVDGDLKGSPIKKGDLLKAATWKAPAKHARGNIIDGTARYGVYGPEYL*
Ga0114341_100081283	F038676	N/A	MRKKEVKIPMTPITEDTFIRQGWKKIEAGDGISEDGGDEDGHYYWVLPIPKYREDEFAPILVSNSTDEQLMLKEIGLKPGQFFIEIGDMDGLGFCGSEEELDILYSALCGEDIEENLENQE*