Scaffold Ga0114341_10003793

Overview

Basic Information

• Taxon OID: 3300008108
• Scaffold ID: Ga0114341_10003793
• Source Dataset Name: Freshwater microbial communities from Harmful Algal Blooms in Lake Erie, Western Basin, USA - Station WLE12, Sample E2014-0048-C-NA
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: University of Michigan
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 23401
• Total Scaffold Genes: 71
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 29 (40.85%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater, Plankton → Harmful Algal Blooms In Lake Erie

Source Dataset Sampling Location

• Location Name: Lake Erie, USA
• Coordinates
  • Lat. (^o): 41.7026
  • Long. (^o): -83.2538
  • Depth (m): 6

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001443	Metagenome / Metatranscriptome	693	Y
F011584	Metagenome / Metatranscriptome	289	Y
F012023	Metagenome / Metatranscriptome	284	Y
F088339	Metagenome / Metatranscriptome	109	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0114341_1000379312	F011584	GAG	MIEYIVTFFAIFFTDIFYVYYLRSVQYDKALNASCWAVVVYLMACVAVIHFTTNHWLLIPAGLGAFCGTYIGMKLRRIYKI*
Ga0114341_1000379348	F012023	AGGA	MKEIDYAKLNERIVEQAYEAVLNKEQLQKLIQDKFERARLYHEAMVKSPTFSVN*
Ga0114341_1000379367	F088339	N/A	MVFYLLECLVLVSAFIYYHHEPKQKQKKIWDPWGFWQGEK*
Ga0114341_100037939	F001443	AGGAG	MPMYETTVRTPTGEEKKRIYADTPQEAKKLFEQLYGGPRAVPYIPHIIPS*