Scaffold Ga0114341_10002316

Overview

Basic Information

• Taxon OID: 3300008108
• Scaffold ID: Ga0114341_10002316
• Source Dataset Name: Freshwater microbial communities from Harmful Algal Blooms in Lake Erie, Western Basin, USA - Station WLE12, Sample E2014-0048-C-NA
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: University of Michigan
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 18525
• Total Scaffold Genes: 43
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 7 (16.28%)
• Novel Protein Genes: 8
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (12.50%)
• Associated Families: 8

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater, Plankton → Harmful Algal Blooms In Lake Erie

Source Dataset Sampling Location

• Location Name: Lake Erie, USA
• Coordinates
  • Lat. (^o): 41.7026
  • Long. (^o): -83.2538
  • Depth (m): 6

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001775	Metagenome / Metatranscriptome	636	Y
F005529	Metagenome / Metatranscriptome	397	Y
F008073	Metagenome	339	Y
F008081	Metagenome / Metatranscriptome	339	Y
F036704	Metagenome	169	Y
F040595	Metagenome / Metatranscriptome	161	Y
F042328	Metagenome	158	Y
F065775	Metagenome	127	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0114341_1000231610	F008081	N/A	MEEIEIINPFGYGKASKVMDENRKPAEWWADYVQFNEVIAENEFYVLFADGFLIKKGRSKFRSSQYLVGDRYKSFKQCHE*
Ga0114341_1000231618	F040595	N/A	MKKLELNNELIGKYINRVLWSDVDPVGKIIAIKGKSKVIIQPVKAGENKVKMEFVAGGFSFHCLNQGSQEYDFIEKGEPFIVSLSNSSLNKRFWRINEHPIKYYDYNF*
Ga0114341_1000231624	F008073	N/A	MKATILKHLQKMEFVCGLKQFKDYNEDDAKELLNCLFALFSSYGWINNDRVDYILHAGMRGQYGDFYHVNEKTVSIWINQYYAHHQSQIVQEVQALNNKDREPTNEEIEYWIEVGKQIFRENYKYAKDNGFCKDLSEWGANWFNKFQEKGILKPWMYQVEDIENDIRRELRLTTRYIDEVTVGAKSKNKIWKLFILESIKENRNLDKLI*
Ga0114341_1000231628	F005529	GAG	MPRMLPKSKPDYSLEIRYRLSNGEWSKWINKGKGTFQSIELVQTQIRILALAYHGREKEVRFEWNGWLCDYAGLPTGEVIVLK*
Ga0114341_1000231636	F042328	N/A	MDNKPKTRLGNGKKRSDSWITSSFCITDAEEHAYTYEGKKYVNININVYEEANKYGKDVVITLNDYKKEEGAKPQENKMPAVPYQAEDYDLPF*
Ga0114341_1000231638	F065775	N/A	MSNFQLNFNSAKKVISVTLEDEEQGIFDLAYLFKKLLDDAGIPNKLEEKAVEVTQEEDIRDRG*
Ga0114341_100023166	F001775	N/A	MIDQRIQIAIISFLAGVILAFVVFPRQEQETVYKFETKVETDTIYSQVVDTIYVPKTKIKTEVLRDTILLDFKPQISLFKTSIPSEYGSTNISGEVLGEVLKMTATNDFKIPVVTNTITNTETKTIIQKAKGIYLGAGVNSLIQPMAKVSYLDNKYLFQYGYQPVTKVHSLGISKKLF*
Ga0114341_100023167	F036704	N/A	MWIEIEVMLSGNTIDWKSLGLDVQHEWSRRMVRVGDIQYVQELMHDIQIISFYDNTTCLIKGDYKEIRSEILHLDQETDLD*