Scaffold Ga0114341_10000658

Overview

Basic Information

• Taxon OID: 3300008108
• Scaffold ID: Ga0114341_10000658
• Source Dataset Name: Freshwater microbial communities from Harmful Algal Blooms in Lake Erie, Western Basin, USA - Station WLE12, Sample E2014-0048-C-NA
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: University of Michigan
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 38294
• Total Scaffold Genes: 59
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 42 (71.19%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (60.00%)
• Associated Families: 5

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater, Plankton → Harmful Algal Blooms In Lake Erie

Source Dataset Sampling Location

• Location Name: Lake Erie, USA
• Coordinates
  • Lat. (^o): 41.7026
  • Long. (^o): -83.2538
  • Depth (m): 6

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000324	Metagenome / Metatranscriptome	1299	Y
F000934	Metagenome / Metatranscriptome	828	Y
F002085	Metagenome / Metatranscriptome	595	Y
F012668	Metagenome / Metatranscriptome	278	Y
F103232	Metagenome	101	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0114341_1000065836	F103232	N/A	VAVDLTGATIDAQIIRRQLSDIKDTRYGLTFDISDYSPPPSPVALTITNRDDEEGTFTLVIDESSWDVISSDPQLDINAQECVGFSGRIKISFPAAGSTPAQDNIIFLLFLVRSDGVVN*
Ga0114341_1000065838	F000324	AGG	VTIRVPPAHSFTYDGAIVNVFHANKGEGLPKHEHVYSHATFCAAGSCIVRKENKEVIVTKQTQPINLKENEWHEIEALENETVFINVFSEIKK*
Ga0114341_1000065843	F002085	GAGG	MNVIAPVENTNNIRYAQFVRVTTADEVFRFATTPAPITVPSVDAQPFDAVGVLMKVGDAQKDIKSTANETAFTLIGIDTAMLGWVLSLNVKGSKIEAWNGFFNTDGELITGGGSGGLYKFFTGYVSSFSISEEWLEEMRQFVGTITVTASSIQLILQNRTAGRYTNNNSWQFFNSGDTSMNRVAFVSTINYYFGKTQ*
Ga0114341_1000065844	F000934	AGTAGG	MSLNTILAISESVGINDQRFVGQMLSRNQRISTSEILTVVPFAFTMKPMNYLLYSENRNLLADLRYYDKSLTQYLNFGTTGWINYIEYQSDMTSGQISACQWQTASANKTLVLGSLPSISSSAYIVRKGDFCQVGLYSYIATSDVQRGSGSTVNIPVHRNLLTTVTSPIAAVIGQYGTTVSMGGSSYTGTTFPVILREYPTYSLMPITDDSFIQWSGNFVAFEAVL*
Ga0114341_1000065852	F012668	N/A	MSITRYENISVNNVTNGTNTIGEYTTTITKWFDTRALVSDVVNSLRISDRYRSYSDIVNLTVNYTPNTKEIVNNQNLYSITYRGFDWRIGDVRESNDRMKVTFMCYRNDPVVAV*