Scaffold Ga0114341_10000563

Overview

Basic Information

• Taxon OID: 3300008108
• Scaffold ID: Ga0114341_10000563
• Source Dataset Name: Freshwater microbial communities from Harmful Algal Blooms in Lake Erie, Western Basin, USA - Station WLE12, Sample E2014-0048-C-NA
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: University of Michigan
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 42007
• Total Scaffold Genes: 72
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 40 (55.56%)
• Novel Protein Genes: 10
• Novel Protein Genes with Ribosome Binding Sites (RBS): 6 (60.00%)
• Associated Families: 10

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater, Plankton → Harmful Algal Blooms In Lake Erie

Source Dataset Sampling Location

• Location Name: Lake Erie, USA
• Coordinates
  • Lat. (^o): 41.7026
  • Long. (^o): -83.2538
  • Depth (m): 6

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001841	Metagenome / Metatranscriptome	627	Y
F002867	Metagenome / Metatranscriptome	524	Y
F003805	Metagenome / Metatranscriptome	467	Y
F004722	Metagenome	426	Y
F006109	Metagenome	381	Y
F006785	Metagenome / Metatranscriptome	364	Y
F010026	Metagenome / Metatranscriptome	309	Y
F011387	Metagenome / Metatranscriptome	291	Y
F021513	Metagenome / Metatranscriptome	218	Y
F022403	Metagenome / Metatranscriptome	214	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0114341_1000056317	F021513	N/A	MNMHILSEHQFQMITQALDEARAALTQCQHVELDLTKPKQTVPLPAGEKITRKAQSQSKTRKSSRGRRGVSSLTEGKVLEIKRQLATGGKSVAKIATEFGVHSTTINNIKFGRTWKSVALQQTAESVG*
Ga0114341_1000056324	F004722	GAG	MSRSRTGRELVMEWLQREIRLAKTADLQRAAAFLEWARAVRKGCSKQRGGARVAQSNAWRKRVDEDVRW*
Ga0114341_1000056325	F022403	AGGAG	MPLRHGQKVYCQLLLDMHRYKLAEELAARDGKKVTGMLREMVYAALEKSLPASDYKAAEAADKASWAESVQRRVQGRMRSKQQPGVSEVDA*
Ga0114341_1000056326	F006109	N/A	LIVTRYVLVTGDRWVTAVYGPGNGVGFTQTKEDASSWVTYECAVAAAKVVMRQVDTPVFVHSVEEPAFPRSWN*
Ga0114341_1000056328	F003805	N/A	MNPLEHSLESQFNKASTDKWLVDRFNSGDYRGLLEAALILNTLHQLEQTKSRWAIREAANNLTERFGLDRDSA*
Ga0114341_1000056331	F002867	GAGG	MPVIRSTLYPSGYALEQLENERGEIFYRACHNSICRYAEDEYIARMYLEGMGWDPKQPPMD*
Ga0114341_1000056333	F010026	N/A	MAVKSKTALGRVEHQLGRPKRTRQGQGQHSRPNHGRKKLRGQGR*
Ga0114341_100005634	F001841	GGA	MGQFTSPNFFLGLLRVAAWLFWRDPVAKSDAPQPKPPRKPTLGYTVAEIPFELLAVIRVAWYRRGKAYEIEEYQIAECPDAQAQFHYIVGGALRQGADVCVLTQYQPEELGVPV*
Ga0114341_1000056362	F011387	GGAG	MAAIANTARDHFSNLIEYTGGTLTAVDDWMEVPAQASSYTFAATVTGGANFQLALECSFNGNGTGNWFTIDSSKTINSNGQYVYFYDGKPAAKIRMRIASISSGTPSIVPHIAVAYHG*
Ga0114341_1000056372	F006785	AGG	MTGGEWTTKGRQREQREQEREQLRLEKRHLRDLRWAIERSTVEASDWQDLLSLQAAHGREGPIQLWRELIPYWRQCQRINGGADIPPDLFPQATGLFPRDSPAAPANRQKPGKGTARKVRSDAGIAKPRRQA*