Scaffold Ga0114340_1129741

Overview

Basic Information

• Taxon OID: 3300008107
• Scaffold ID: Ga0114340_1129741
• Source Dataset Name: Freshwater microbial communities from Harmful Algal Blooms in Lake Erie, Western Basin, USA - Station WLE2, Sample E2014-0046-3-NA
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: University of Michigan
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1564
• Total Scaffold Genes: 5
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater, Plankton → Harmful Algal Blooms In Lake Erie

Source Dataset Sampling Location

• Location Name: Lake Erie, USA
• Coordinates
  • Lat. (^o): 41.7635
  • Long. (^o): -83.3309
  • Depth (m): 4.9

Associated Families

Family	Category	Number of Sequences	3D Structure?
F026552	Metagenome	197	N
F036695	Metagenome	169	N
F049442	Metagenome	146	N
F076079	Metagenome	118	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0114340_11297411	F036695	N/A	KIIPPNDIVHKYTVASHNDVELLVIKVILNIDINDKGQRGDGERMLYENNFDAYKLSETIRTKILKPLGLLNKISWGVLIVIDASGNRIIEHSMIKN*
Ga0114340_11297412	F076079	N/A	MKYLITENQKENVIKKYILSNFDRVDDVWFTTRSVYYGSGPINGKDSGEQIIINILVNNLDDELTKLNLIDLKRSIINKTDKTFNLGYNTYGSKWEFSFRKKVIENF*
Ga0114340_11297413	F026552	N/A	MDIPKVIEKLMNRDSFLNLLENDIIEKFEVSVSPFESKILIIKMFLNITKDEFLGTGESTPRLSEWEVRGKLWEDYNLDSAWWHAHIIPNRILKPLVGKNYFIKIIXXIIL*
Ga0114340_11297414	F049442	N/A	MNKENLEQGLTKLLKTFYSKKYDRDFSDLTVVLDEYEEDADDIDSEGNWSSAESYYFTVYSNDFDGLPIQKLYELARELFGNIIGSKNWIDIEFKNYEN*