Scaffold Ga0114340_1097707

Overview

Basic Information

• Taxon OID: 3300008107
• Scaffold ID: Ga0114340_1097707
• Source Dataset Name: Freshwater microbial communities from Harmful Algal Blooms in Lake Erie, Western Basin, USA - Station WLE2, Sample E2014-0046-3-NA
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: University of Michigan
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1180
• Total Scaffold Genes: 4
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater, Plankton → Harmful Algal Blooms In Lake Erie

Source Dataset Sampling Location

• Location Name: Lake Erie, USA
• Coordinates
  • Lat. (^o): 41.7635
  • Long. (^o): -83.3309
  • Depth (m): 4.9

Associated Families

Family	Category	Number of Sequences	3D Structure?
F022649	Metagenome	213	Y
F048309	Metagenome / Metatranscriptome	148	Y
F048996	Metagenome	147	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0114340_10977072	F048996	N/A	MLVINNIEKLENKTIGAWRIEGLETDFAKTRYYDYNYTIRLSRNGVGAAIIIERTAGEYGYNVSIAYEEYDNIISITPWPKDRLIDKANFMASMRGVMDAEYDKKN*
Ga0114340_10977073	F048309	N/A	MLIIKNIDKVMNMTCYGRQIYNISTHRNKIGEESYVFEFDAIEDGQVPTGYNKPKEIHLVRNEYSGTYRLFCMGLQVATERRIDLSEIKCLTSLLVEISEVLRKTKYWWEHSKTN*
Ga0114340_10977074	F022649	N/A	IRANTIKNVTMLIIKNPNDIKGMNFVDGRFTLREVEIYDERYKFGFKETNRGRWVYVDVYRNPKWDSERGENMYQVDNGRFKSHWISAKWFGEIKNVKFTFTEALKLL*