Scaffold Ga0114340_1093835

Overview

Basic Information

• Taxon OID: 3300008107
• Scaffold ID: Ga0114340_1093835
• Source Dataset Name: Freshwater microbial communities from Harmful Algal Blooms in Lake Erie, Western Basin, USA - Station WLE2, Sample E2014-0046-3-NA
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: University of Michigan
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1213
• Total Scaffold Genes: 5
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (80.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater, Plankton → Harmful Algal Blooms In Lake Erie

Source Dataset Sampling Location

• Location Name: Lake Erie, USA
• Coordinates
  • Lat. (^o): 41.7635
  • Long. (^o): -83.3309
  • Depth (m): 4.9

Associated Families

Family	Category	Number of Sequences	3D Structure?
F026266	Metagenome	198	Y
F049625	Metagenome	146	Y
F054861	Metagenome	139	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0114340_10938353	F049625	GAGG	MLSEIDLKDWIEQPSIPLYDVPRETPIKTPMGMLWFKHIDGMYSLNYDANGHPVHMKAWVKVNPFKRKQDE*
Ga0114340_10938354	F026266	AGGA	MTIETITFHFVGQLEDSGAIVDVQCQIDEDGDCISLDSAMYQGIDVLEVISHSQWENLQWEGSKKYKAERDTQAGIDFENSL*
Ga0114340_10938355	F054861	N/A	HNTLYRETVTKMNTKLLKHTRELFKSYDVPEHVRRSYRLKWVRSIRNLGDKWLFAHHVQRKDAQ*