Scaffold Ga0114340_1066259

Overview

Basic Information

• Taxon OID: 3300008107
• Scaffold ID: Ga0114340_1066259
• Source Dataset Name: Freshwater microbial communities from Harmful Algal Blooms in Lake Erie, Western Basin, USA - Station WLE2, Sample E2014-0046-3-NA
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: University of Michigan
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1535
• Total Scaffold Genes: 7
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 5 (71.43%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater, Plankton → Harmful Algal Blooms In Lake Erie

Source Dataset Sampling Location

• Location Name: Lake Erie, USA
• Coordinates
  • Lat. (^o): 41.7635
  • Long. (^o): -83.3309
  • Depth (m): 4.9

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001477	Metagenome / Metatranscriptome	687	Y
F003212	Metagenome / Metatranscriptome	500	Y
F031031	Metagenome	183	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0114340_10662591	F031031	GGAGG	MESKEVSGKQSIHYRNYRRARDKALVRLAHLYPDTYKQLLDEQR
Ga0114340_10662592	F001477	AGGAGG	MNNIYTIHPKKSELILFYEVLTPEGENEWGGASAEHCIQWLSLAPSGSRVLVSAWDSDEEDAHLVGQTLDITEIVRAASL*
Ga0114340_10662595	F003212	AGTAG	MREDRAMKDKWLVTLEIDTYDGDPRLWDWEKLSTGEDEIKIIESQFKGRVLSEEGESNE*