Scaffold Ga0114340_1049152

Overview

Basic Information

• Taxon OID: 3300008107
• Scaffold ID: Ga0114340_1049152
• Source Dataset Name: Freshwater microbial communities from Harmful Algal Blooms in Lake Erie, Western Basin, USA - Station WLE2, Sample E2014-0046-3-NA
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: University of Michigan
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1852
• Total Scaffold Genes: 8
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 7 (87.50%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater, Plankton → Harmful Algal Blooms In Lake Erie

Source Dataset Sampling Location

• Location Name: Lake Erie, USA
• Coordinates
  • Lat. (^o): 41.7635
  • Long. (^o): -83.3309
  • Depth (m): 4.9

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001176	Metagenome / Metatranscriptome	756	Y
F001280	Metagenome / Metatranscriptome	732	Y
F028166	Metagenome / Metatranscriptome	192	Y
F061853	Metagenome / Metatranscriptome	131	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0114340_10491522	F061853	GAG	MNKKTITLIGLGLSLAAIAYVTYNSLSQLKDIDYDLFATDEDEDD*
Ga0114340_10491524	F001176	GAG	MSNNGTGMDTPPNNAPSGAVTSQEATRKNPSQGKFKSGFSGPRPATKIDTNKHGIRRETILGQKKTKPKKV*
Ga0114340_10491525	F001280	GGCGG	VCVECGCEAFGSESGMSSIPGGILNVSTDGEAGLTLNMTATPEQRERFINEQ*
Ga0114340_10491526	F028166	AGGAG	MSGINTEGFGQTGEQSGSNNLDLNPTGQAPAAAFPATDKSSQDGAGLGNGGK*