Scaffold Ga0114340_1045408

Overview

Basic Information

• Taxon OID: 3300008107
• Scaffold ID: Ga0114340_1045408
• Source Dataset Name: Freshwater microbial communities from Harmful Algal Blooms in Lake Erie, Western Basin, USA - Station WLE2, Sample E2014-0046-3-NA
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: University of Michigan
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1947
• Total Scaffold Genes: 7
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (14.29%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (25.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater, Plankton → Harmful Algal Blooms In Lake Erie

Source Dataset Sampling Location

• Location Name: Lake Erie, USA
• Coordinates
  • Lat. (^o): 41.7635
  • Long. (^o): -83.3309
  • Depth (m): 4.9

Associated Families

Family	Category	Number of Sequences	3D Structure?
F005293	Metagenome / Metatranscriptome	405	Y
F029411	Metagenome / Metatranscriptome	188	Y
F040616	Metagenome / Metatranscriptome	161	N
F085603	Metagenome / Metatranscriptome	111	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0114340_10454082	F029411	N/A	MNVDFSTIDPQNELSDLYTPDYREQSINEDAYLDQAYEDRFECACMEDYQ*
Ga0114340_10454083	F005293	AGGA	MTSDYVPFVPTRDDLIGFISDTYKEINGFRPRPNWSELTYNQLDQWGRELSVQVFNYRKEQVVRNRIARGLRRAQQRAWVEKKRGYFTPARFTLGNVVNF*
Ga0114340_10454086	F040616	N/A	MIDPEDIAYEDSVSSDTAGWPGDGSGEDDFQDYNQNEAGDYYNE*
Ga0114340_10454087	F085603	N/A	SIYTMKVQIEFDTDNAAFEDSFLMEVTRTLQQCKSALLDSERGTITIRRPIKDSNGNRIGVVSIGNN*