NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0114340_1034610

Scaffold Ga0114340_1034610


Overview

Basic Information
Taxon OID3300008107 Open in IMG/M
Scaffold IDGa0114340_1034610 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Harmful Algal Blooms in Lake Erie, Western Basin, USA - Station WLE2, Sample E2014-0046-3-NA
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterUniversity of Michigan
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)3336
Total Scaffold Genes11 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (9.09%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families5

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater, Plankton → Harmful Algal Blooms In Lake Erie

Source Dataset Sampling Location
Location NameLake Erie, USA
CoordinatesLat. (o)41.7635Long. (o)-83.3309Alt. (m)Depth (m)4.9
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F015599Metagenome / Metatranscriptome253Y
F018537Metagenome234Y
F028510Metagenome191Y
F030084Metagenome / Metatranscriptome186Y
F030760Metagenome / Metatranscriptome184N

Sequences

Protein IDFamilyRBSSequence
Ga0114340_10346101F028510N/AMGNQYKQRTYQCKCGALTKEYVWDNELENAKIKCSDCSKIITNKNLVKVNQAVSIRTPTKNR*
Ga0114340_103461010F018537N/AMPAGRTSNYIATIPMKNEEQVLEVKKVLEQIFGWVTLRGRHSDRKSVVKGWGKSRQNDVPWRVAQYIDIYLHHANPNRMRIYQKKGMERKNLSLNASSVMIARTLGSMGYSLADGVKHAEQSKPSSPLMAVKELQYQNQMKDPKFQRKEMKRKYQNKSYQLQPGDWGYITQSLLDYTYLCNKVTFTQLKRHYDITLRGNSGLQKGGSFIHHLQALVKRDNAENRRCSRYLVKGVDGRYEIGYYLKLKQ*
Ga0114340_103461011F030760N/AGDKVTIKGLSYSTIMGIAKNNTELQSITITKQYEKKIK*
Ga0114340_10346104F015599N/AMKLTIKNYEKLFRKEWDSENYIEEIDERRDEYRINVWRGHMRHFIYLFRNPVENGYYKIGKWSNESYSVRYPYWIKHEDIMNMDSLMDKLKLMTDEWKPKLL*
Ga0114340_10346108F030084N/AMDVMVSIMCTRDKSSHAGGGFVQAVVANDLYLAMSRADADCRNNIYLLTMCKQNCFLNEYDY*
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Bioinformatics & Integrated Biology Lab
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