Scaffold Ga0114340_1033907

Overview

Basic Information

• Taxon OID: 3300008107
• Scaffold ID: Ga0114340_1033907
• Source Dataset Name: Freshwater microbial communities from Harmful Algal Blooms in Lake Erie, Western Basin, USA - Station WLE2, Sample E2014-0046-3-NA
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: University of Michigan
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 4111
• Total Scaffold Genes: 11
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (9.09%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (25.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater, Plankton → Harmful Algal Blooms In Lake Erie

Source Dataset Sampling Location

• Location Name: Lake Erie, USA
• Coordinates
  • Lat. (^o): 41.7635
  • Long. (^o): -83.3309
  • Depth (m): 4.9

Associated Families

Family	Category	Number of Sequences	3D Structure?
F009073	Metagenome / Metatranscriptome	323	Y
F017129	Metagenome / Metatranscriptome	242	Y
F048784	Metagenome	147	Y
F092051	Metagenome	107	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0114340_103390711	F017129	N/A	MSRYNYFNDVQAYEELEAKRAQIALDPAYQAWVKELHISQSYVEPEGAIKAKLLNEQYDFSSKTTTSPIWNFLKLKGIWS*
Ga0114340_10339072	F048784	N/A	MNINTEKLVSVFSQDELSALMTAMGGYINTKNKQKRSTGIEVVLFNKIVDALLVSNYLNAVEVEVKPGRVGVAEYKLAEAAGQF*
Ga0114340_10339074	F009073	AGG	MKNYQIILTAILSFGVGISILNGTAQQYIPFAGIENELGCATIALTMGVLSLYAIDWKGLFSYLNK*
Ga0114340_10339079	F092051	N/A	MKSFKIREGIVHIDGVLYGQTPTELKVKGKSGNIQSISIPNKGQFFPIGGEFIDSTIKVTDDSTGIMEDTKPLKKSRKK*