Scaffold Ga0114340_1032533

Overview

Basic Information

• Taxon OID: 3300008107
• Scaffold ID: Ga0114340_1032533
• Source Dataset Name: Freshwater microbial communities from Harmful Algal Blooms in Lake Erie, Western Basin, USA - Station WLE2, Sample E2014-0046-3-NA
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: University of Michigan
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3570
• Total Scaffold Genes: 12
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (8.33%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (25.00%)
• Associated Families: 4

Taxonomy: All Organisms → cellular organisms → Archaea → unclassified Archaea → archaeon (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater, Plankton → Harmful Algal Blooms In Lake Erie

Source Dataset Sampling Location

• Location Name: Lake Erie, USA
• Coordinates
  • Lat. (^o): 41.7635
  • Long. (^o): -83.3309
  • Depth (m): 4.9

Associated Families

Family	Category	Number of Sequences	3D Structure?
F007859	Metagenome / Metatranscriptome	343	Y
F009135	Metagenome / Metatranscriptome	322	Y
F039627	Metagenome / Metatranscriptome	163	N
F042296	Metagenome / Metatranscriptome	158	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0114340_10325332	F009135	N/A	MNKPKYYLTVNLPPNFDEVDADTIKNDLMAYINSKNQYGAMYGPKSSKKGITIDKVIYRTNED*
Ga0114340_10325334	F042296	N/A	MNLFKSIIKWTGVIVYAAFLATVAYAATMPEPIKLYVIYTYKFNERVIEKIYMKKENAQKYCDMYKEHHNYTFEEITISE*
Ga0114340_10325335	F007859	GAG	MKKLLIITLLCTGCNTGIFLRYNYPKALGSLPPCSRVHAINNKYITYSMVEISTNNVYTAHTNYYTKNIV*
Ga0114340_10325339	F039627	N/A	MTASFYKAVYQRKLNELPSWKKLAVMEDSERNNWSGILTDFVKSVIEEAEKEYANSKTTISDTQSKYVSDSEKTKKKVEKKS*