Scaffold Ga0114340_1029648

Overview

Basic Information

• Taxon OID: 3300008107
• Scaffold ID: Ga0114340_1029648
• Source Dataset Name: Freshwater microbial communities from Harmful Algal Blooms in Lake Erie, Western Basin, USA - Station WLE2, Sample E2014-0046-3-NA
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: University of Michigan
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2519
• Total Scaffold Genes: 7
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (14.29%)
• Novel Protein Genes: 6
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (16.67%)
• Associated Families: 6

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater, Plankton → Harmful Algal Blooms In Lake Erie

Source Dataset Sampling Location

• Location Name: Lake Erie, USA
• Coordinates
  • Lat. (^o): 41.7635
  • Long. (^o): -83.3309
  • Depth (m): 4.9

Associated Families

Family	Category	Number of Sequences	3D Structure?
F009267	Metagenome / Metatranscriptome	320	N
F011222	Metagenome / Metatranscriptome	293	N
F018136	Metagenome / Metatranscriptome	236	N
F035667	Metagenome	171	N
F044972	Metagenome / Metatranscriptome	153	N
F068567	Metagenome	124	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0114340_10296482	F018136	N/A	MITDSTYTLTLEKALTDTFVLALQQEMQSALVVTAAENFGTMTLPACFVKCTRQRESIIDSAIFQFSVDIALIVQADDMDQMAMENLWSQVLCISPDITGLKTKLNAVRPQYAFVFGILRDGPVSLSTNERHFERSVTITVHAALFAS*
Ga0114340_10296483	F044972	N/A	MPATVITSSVASGVEFGLLQETGLLLNSFSRSVQSDKATVMDALGDTVAVAYFNKSATISLDGVVNGGVAYELANVLTLANDTSSYGVSGGAVIVDSVSETTGAGTFKTITVSATQYPEIV*
Ga0114340_10296484	F011222	N/A	MPLAPRLKGAAFFKYMDANKKFFHTINLKAAVALATMGFKMNFPPVTRLVRTDGKESTEFWFEGENDKGQDASQVYRQMTKEGDELEAKDPENPLCYIRAALANRDVLVDIIRNTPRLIEVEHNGKRIAISENASDKTKQEMTRFLK*
Ga0114340_10296485	F009267	N/A	MKKIQNTDLVKDDEILRIQAMEDGPKKVNGRTMRPITALTISWMQRNEVFSGDMDPVWKAAAFTFLHSEPMSTIRGAVNDRDTFINAVDSWIEKNMTHHHETSAMSDEMGKAFDLYNSASPASQPGEGSGSGN*
Ga0114340_10296486	F035667	N/A	VKITGWGFREIMEELPFAAGLQLLHADDYANGRHSAWANNNASVNVDALATIEDTLAKYGKIQVRECEV*
Ga0114340_10296487	F068567	GAG	VKFEQIMKDYATIREVTIPDAVMLNARLLCVELARRTQPFGDKQEAGTIRVKNDIGKIIKTTDQLDEYADRVGSQRIKARLKDLIKSGR