Scaffold Ga0114340_1029509

Overview

Basic Information

• Taxon OID: 3300008107
• Scaffold ID: Ga0114340_1029509
• Source Dataset Name: Freshwater microbial communities from Harmful Algal Blooms in Lake Erie, Western Basin, USA - Station WLE2, Sample E2014-0046-3-NA
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: University of Michigan
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 6842
• Total Scaffold Genes: 23
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 17 (73.91%)
• Novel Protein Genes: 6
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (66.67%)
• Associated Families: 6

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater, Plankton → Harmful Algal Blooms In Lake Erie

Source Dataset Sampling Location

• Location Name: Lake Erie, USA
• Coordinates
  • Lat. (^o): 41.7635
  • Long. (^o): -83.3309
  • Depth (m): 4.9

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000447	Metagenome / Metatranscriptome	1128	Y
F000808	Metagenome / Metatranscriptome	882	Y
F002515	Metagenome / Metatranscriptome	552	Y
F024314	Metagenome / Metatranscriptome	206	Y
F039631	Metagenome / Metatranscriptome	163	Y
F048982	Metagenome / Metatranscriptome	147	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0114340_102950910	F039631	AGGTGG	MTTLDQNYIKSSAYGHMTLNQRIALAAEKVANGEPVNFRGASVTTYAKVMRLANRIKQEREFPQCPCGECD*
Ga0114340_102950917	F000447	GAG	MGYIEIFRLDETGAGWVNLDNATPDELFNLEVGLLNEGALFTTKEND*
Ga0114340_102950918	F000808	AGGAG	MEYNYSLTTSYDGVLVSTLRSADMIEVVDAWHRCKDFGDAKEYATYNITDPWGKMVTKTFYRDGRVTGK*
Ga0114340_102950922	F002515	N/A	MKKNAEELRRLMELRRSNAASAVPNKKKYNRKKCQSELIQLKYQQKGE*
Ga0114340_10295093	F024314	N/A	MNEEQKLTPEQAQAILLFQIEQKLREHIANQVEEKFHGTYHNESHEIAQFIRNMA*
Ga0114340_10295097	F048982	AGGA	MISIELQDVLATTRKIRNNDRDSGTHYLLGYLWANTPDKEKERIAKLFAKDLEMENNK*