Scaffold Ga0114340

Basic Information
Taxon OID	3300008107 Open in IMG/M
Scaffold ID	Ga0114340_1028559 Open in IMG/M
Source Dataset Name	Freshwater microbial communities from Harmful Algal Blooms in Lake Erie, Western Basin, USA - Station WLE2, Sample E2014-0046-3-NA
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	University of Michigan
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

Scaffold ID

Source Dataset Name

Freshwater microbial communities from Harmful Algal Blooms in Lake Erie, Western Basin, USA - Station WLE2, Sample E2014-0046-3-NA

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

University of Michigan

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	2573
Total Scaffold Genes	10 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	9 (90.00%)
Novel Protein Genes	7 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	6 (85.71%)
Associated Families	7

Scaffold Components

Scaffold Length (bps)

2573

Total Scaffold Genes

10 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

9 (90.00%)

Novel Protein Genes

7 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

6 (85.71%)

Associated Families

Taxonomy
All Organisms → Viruses → Predicted Viral	(Source: DeepVirFinder)

Taxonomy

All Organisms → Viruses → Predicted Viral

(Source: DeepVirFinder)

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater, Plankton → Harmful Algal Blooms In Lake Erie

Source Dataset Ecosystem

Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater, Plankton → Harmful Algal Blooms In Lake Erie

Source Dataset Sampling Location
Location Name	Lake Erie, USA
Coordinates	Lat. (^o)	41.7635	Long. (^o)	-83.3309	Alt. (m)	Depth (m)	4.9
Location on Map

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Source Dataset Sampling Location

Location Name

Lake Erie, USA

Coordinates

Lat. (^o)

41.7635

Long. (^o)

-83.3309

Alt. (m)

Depth (m)

4.9

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000263	Metagenome / Metatranscriptome	1424	Y
F000441	Metagenome / Metatranscriptome	1136	Y
F005504	Metagenome / Metatranscriptome	398	Y
F013184	Metagenome / Metatranscriptome	273	Y
F020171	Metagenome / Metatranscriptome	225	Y
F022414	Metagenome / Metatranscriptome	214	Y
F084239	Metagenome / Metatranscriptome	112	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0114340_10285591	F022414	GAGG	MTKTIEIKVAEQIVNLTDDHWFNPAIFGRYLAEQPLYTSDRIMEMIAYIVHEQAKMHITNSLKGTSSEGLLLANELNECIKAYREVNVINNLTLPKPTTYTIKREEPTRQAVFGWREDKDPFQ*
Ga0114340_102855910	F005504	N/A	CLLTLEFEEETGWGGEYEIVRGEVKELLDYETRCYACQSFDCIEYCENDCGEFCSECNEGSWQDDKAMAECQTHMVLLPLKSYTQEEALNG*
Ga0114340_10285593	F000441	AGGAGG	MSDEYINDQLSKAQKLLWGGSETENIEAHNIISKLIKDRVEQIN*
Ga0114340_10285595	F000263	AGG	MTPEDIGLPPHLQRMVNAGVTGLDIMHGELKNLMLVAEQELADAQAMEDETEEAMDSMERTRCEGVLDTLVSLYDLTYQLSFAIGARDEA*
Ga0114340_10285596	F084239	GGAG	MTKSSYFLEYMKLHEISLMQDLEKIDYVNEHHFYRCKEAEILNTRHLLSVATDIMNSTNERYE*
Ga0114340_10285598	F013184	AGGAG	MKDYAFVIKLAGSVSANNEQEAWDKINSHVDDLGDVESAQYDLHWPDVSWDMEYELC*
Ga0114340_10285599	F020171	AGGAGG	MAEQFIDTIAEHITGAIQQEIAEELFDNWSNAMLDEGPAYAEYRFMEYASDELKQQYNEYYGYIEGDEYLL*

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0114340_1028559

Overview

Ecosystem & Geography

Associated Families

Sequences