Scaffold Ga0114340_1026872

Overview

Basic Information

• Taxon OID: 3300008107
• Scaffold ID: Ga0114340_1026872
• Source Dataset Name: Freshwater microbial communities from Harmful Algal Blooms in Lake Erie, Western Basin, USA - Station WLE2, Sample E2014-0046-3-NA
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: University of Michigan
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 5083
• Total Scaffold Genes: 18
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (5.56%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 4

Taxonomy: All Organisms → cellular organisms → Archaea → unclassified Archaea → archaeon (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater, Plankton → Harmful Algal Blooms In Lake Erie

Source Dataset Sampling Location

• Location Name: Lake Erie, USA
• Coordinates
  • Lat. (^o): 41.7635
  • Long. (^o): -83.3309
  • Depth (m): 4.9

Associated Families

Family	Category	Number of Sequences	3D Structure?
F009333	Metagenome / Metatranscriptome	319	Y
F010836	Metagenome / Metatranscriptome	298	Y
F027843	Metagenome	193	Y
F047046	Metagenome / Metatranscriptome	150	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0114340_10268721	F010836	N/A	MATSNFHNVNATHIFACSLENEWDYEDLVDNLKSELNNDPDYVDYGKTDHNELRSFPSRSLGSLRRYIQYKDFYVEVCVTAVIRSGYYSGCNLDWNVDYLINGDASYDSPDFYIDDIAHYGNLPKSKATIYAKLAEKKAEKVKD
Ga0114340_102687212	F047046	N/A	MNIISIIAPNKQSVDLKSVIGKEVSENHSPTCRGKLIKVNKTTCTFEVVKSPYRSGDESRVGERYLVPISWAWNAFFF*
Ga0114340_102687214	F009333	N/A	MNTLRFNRHKLFTNEMMDYHMNRNESWFTSLYNMLCGVWDGYLYTEMLETAKQMGLPTHITNRIQFTESFINK*
Ga0114340_10268724	F027843	N/A	LVVKREFKAESWFVQGLFANKFTAEEACEAYHVEKLLRDSNNTHFLVNEVPEAQIVID*