Scaffold Ga0114340_1024819

Overview

Basic Information

• Taxon OID: 3300008107
• Scaffold ID: Ga0114340_1024819
• Source Dataset Name: Freshwater microbial communities from Harmful Algal Blooms in Lake Erie, Western Basin, USA - Station WLE2, Sample E2014-0046-3-NA
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: University of Michigan
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2790
• Total Scaffold Genes: 9
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 8 (88.89%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater, Plankton → Harmful Algal Blooms In Lake Erie

Source Dataset Sampling Location

• Location Name: Lake Erie, USA
• Coordinates
  • Lat. (^o): 41.7635
  • Long. (^o): -83.3309
  • Depth (m): 4.9

Associated Families

Family	Category	Number of Sequences	3D Structure?
F040536	Metagenome	161	N
F041090	Metagenome	160	Y
F055552	Metagenome	138	Y
F090097	Metagenome	108	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0114340_10248192	F041090	AGAAGG	MRNETTSGSQENIVRLSDIRSEKQRASSPYGPVSQGLTTSQRTDRDQALTELLSSLENVVADLNSKSYTALDTLIIAIQGARVALSGTTTEETGTDV*
Ga0114340_10248193	F090097	GGAGG	MKEIARKRVSGKQAIHYRNYRRARDRALVRLSQAYPETYKELLELEKVTDETTGAKWFDIDGSNSLIVGVHTGGGEQEPSGNTSNLTEGEGDSE*
Ga0114340_10248195	F040536	GAGG	MDKMGKLIAFHPVRSGLKLFYEVIEPDGETRWGGERVFDAVSWLHLAPRGSRLLVSGWESDDLDALPVGQPLDVTELYQTLKGND*
Ga0114340_10248197	F055552	GAG	MNLEYWQAKAEMCRRTGIEQLMAGDIPNGTRNLKRMVRAMEEINLIKAGEDKSAEDMWASLIANGLLLAGEGESNE*