NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0114340_1024251

Scaffold Ga0114340_1024251


Overview

Basic Information
Taxon OID3300008107 Open in IMG/M
Scaffold IDGa0114340_1024251 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Harmful Algal Blooms in Lake Erie, Western Basin, USA - Station WLE2, Sample E2014-0046-3-NA
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterUniversity of Michigan
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)5307
Total Scaffold Genes14 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (14.29%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families5

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater, Plankton → Harmful Algal Blooms In Lake Erie

Source Dataset Sampling Location
Location NameLake Erie, USA
CoordinatesLat. (o)41.7635Long. (o)-83.3309Alt. (m)Depth (m)4.9
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F003691Metagenome / Metatranscriptome473Y
F005299Metagenome / Metatranscriptome405Y
F025025Metagenome203Y
F032282Metagenome180Y
F103233Metagenome / Metatranscriptome101Y

Sequences

Protein IDFamilyRBSSequence
Ga0114340_10242511F003691N/AMTNEFNQFTETAYNTSRNERPIYKNFAATKMSSAVKPQSIVEFKDFMGRTHKVAVRNNTELKKQMKFFAELKKESATIKQIISQYPIKLGKVEKRFIADCKRELKQFGLTKKAIDIVLG*
Ga0114340_102425110F032282N/AMNSNSSIVDIDIEKYNSIEKEREKIMGDEKFIAWLNEYKIGSRIEVKDYRATELMQQYTNYPKWVASKY*
Ga0114340_10242513F005299N/AMSSIPTHNPHTIDGFDSPLYIWEEKVGYDSANKKMIAKVYKHLWNVMNFVSKPSWTKVIYDMLVEDNKLGKVSLNGYYSTIRTNLKDIGVIQYNGRKGLSKGPHWDRFYSDEDWSWFKTNTNSGGYGIIVK*
Ga0114340_10242515F103233N/AMSKGQTDNELYEALIELGYDFGEIDTDDFDEDGFSETAVNLGYRWDENKKEWFNK*
Ga0114340_10242516F025025N/AMSKKLKEIKLGKRGYKAVVKNKKFNFGDGKHIYEVIELSGPKMDKPRIFVDEESVRKYVGDIEVETKMDKLENSLIKNVLSKKEKKELLASKVMEGALVSDKMVLDTAYSTYYNGGSLSVETTTANGEDTDK*
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