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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| Taxon OID | 3300008107 Open in IMG/M |
| Scaffold ID | Ga0114340_1024183 Open in IMG/M |
| Source Dataset Name | Freshwater microbial communities from Harmful Algal Blooms in Lake Erie, Western Basin, USA - Station WLE2, Sample E2014-0046-3-NA |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | University of Michigan |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 6154 |
| Total Scaffold Genes | 19 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 5 (26.32%) |
| Novel Protein Genes | 5 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 1 (20.00%) |
| Associated Families | 5 |
| Taxonomy | |
|---|---|
| All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Crocinitomicaceae → unclassified Crocinitomicaceae → Crocinitomicaceae bacterium | (Source: UniRef50) |
| Source Dataset Ecosystem |
|---|
| Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater, Plankton → Harmful Algal Blooms In Lake Erie |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | Lake Erie, USA | |||||||
| Coordinates | Lat. (o) | 41.7635 | Long. (o) | -83.3309 | Alt. (m) | Depth (m) | 4.9 | Location on Map |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F013087 | Metagenome | 274 | Y |
| F039139 | Metagenome | 164 | N |
| F043397 | Metagenome | 156 | N |
| F078705 | Metagenome | 116 | N |
| F093847 | Metagenome | 106 | N |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0114340_102418319 | F043397 | AGGAG | MPRYDVYIPFTASYEGEPYDEEFDVKVEADNEKDAIKKAIEELNSEYVVKTLNSDEITVEEIPDFPSFDDWEEKYTARNNPFAREGEQGLGEIMFDTDGDEYQTVRGYDTGKIWTVRSTEYGLMLTAGFGVVDRLGYILSEESITEEDWSKAYIID* |
| Ga0114340_10241833 | F013087 | N/A | MEPTVWIYFSKTGTGYELQGTDIISGFDAFIYTAGTYLIEHSFSEIKEEMYFFIYEWDNSQKKRRTIYERNQRQNILLNFAKNVDLVHNVRQAIYQEYMDEEEIENANS* |
| Ga0114340_10241834 | F078705 | N/A | MYIAVDAIASEDDPKLSYLLFPYDEDLLEAIEENLKEIRVEDEIIFSLDDVLLIRGEFHYVRKKVTMTDISEHRFSLGHNTESIPVLVNSKLHVANDYFYFSGYRKGTRNDKSNLKYVSGNFNLITIENLRKYVKSKKAMVK* |
| Ga0114340_10241835 | F093847 | N/A | LTINLRKTFARVVYFIEQTNQGKSKETILKELDLSEDEFQFLLNTMLSFSALKDNEATISSLDINGTVYIGGVYVTINNKDMISL* |
| Ga0114340_10241836 | F039139 | N/A | MSMFLSAFEFTSEDIVTILRAHDTDITIHQLAELHDILDHDSIVRSALQYNDPDMQIKSALSHAEDLMIMDGLYITEPKRFYVDD* |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |