Scaffold Ga0114340_1023948

Overview

Basic Information

• Taxon OID: 3300008107
• Scaffold ID: Ga0114340_1023948
• Source Dataset Name: Freshwater microbial communities from Harmful Algal Blooms in Lake Erie, Western Basin, USA - Station WLE2, Sample E2014-0046-3-NA
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: University of Michigan
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2848
• Total Scaffold Genes: 12
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 10 (83.33%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater, Plankton → Harmful Algal Blooms In Lake Erie

Source Dataset Sampling Location

• Location Name: Lake Erie, USA
• Coordinates
  • Lat. (^o): 41.7635
  • Long. (^o): -83.3309
  • Depth (m): 4.9

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002037	Metagenome / Metatranscriptome	600	Y
F019123	Metagenome / Metatranscriptome	231	Y
F024784	Metagenome	204	Y
F030690	Metagenome / Metatranscriptome	184	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0114340_102394811	F030690	AGGA	MQRSEVEIICNHMLGKTIVSCEAEHGDSTIIIQLDDDSYIEITGEELSVYGELTPLDD*
Ga0114340_10239484	F019123	AGTAG	MDSKPLTQEEIIKIYKAAFGYGSQVITLDKVFKFARLLEQAHGVKDVI*
Ga0114340_10239487	F024784	AGAAGG	MAILEKIIDWIVWGLIIGGMGWFFYGCYQLIDLFFIRG*
Ga0114340_10239489	F002037	AGG	MNKTYWVFIVVLAALAIWGTEKALGHTTTILTPDGSVTVCQVGSNGIVICV*