Basic Information | |
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Taxon OID | 3300008107 Open in IMG/M |
Scaffold ID | Ga0114340_1023948 Open in IMG/M |
Source Dataset Name | Freshwater microbial communities from Harmful Algal Blooms in Lake Erie, Western Basin, USA - Station WLE2, Sample E2014-0046-3-NA |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | University of Michigan |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 2848 |
Total Scaffold Genes | 12 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 10 (83.33%) |
Novel Protein Genes | 4 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 4 (100.00%) |
Associated Families | 4 |
Taxonomy | |
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All Organisms → Viruses → Predicted Viral | (Source: DeepVirFinder) |
Source Dataset Ecosystem |
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Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater, Plankton → Harmful Algal Blooms In Lake Erie |
Source Dataset Sampling Location | ||||||||
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Location Name | Lake Erie, USA | |||||||
Coordinates | Lat. (o) | 41.7635 | Long. (o) | -83.3309 | Alt. (m) | Depth (m) | 4.9 | Location on Map |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
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F002037 | Metagenome / Metatranscriptome | 600 | Y |
F019123 | Metagenome / Metatranscriptome | 231 | Y |
F024784 | Metagenome | 204 | Y |
F030690 | Metagenome / Metatranscriptome | 184 | N |
Protein ID | Family | RBS | Sequence |
---|---|---|---|
Ga0114340_102394811 | F030690 | AGGA | MQRSEVEIICNHMLGKTIVSCEAEHGDSTIIIQLDDDSYIEITGEELSVYGELTPLDD* |
Ga0114340_10239484 | F019123 | AGTAG | MDSKPLTQEEIIKIYKAAFGYGSQVITLDKVFKFARLLEQAHGVKDVI* |
Ga0114340_10239487 | F024784 | AGAAGG | MAILEKIIDWIVWGLIIGGMGWFFYGCYQLIDLFFIRG* |
Ga0114340_10239489 | F002037 | AGG | MNKTYWVFIVVLAALAIWGTEKALGHTTTILTPDGSVTVCQVGSNGIVICV* |
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