Scaffold Ga0114340_1022054

Overview

Basic Information

• Taxon OID: 3300008107
• Scaffold ID: Ga0114340_1022054
• Source Dataset Name: Freshwater microbial communities from Harmful Algal Blooms in Lake Erie, Western Basin, USA - Station WLE2, Sample E2014-0046-3-NA
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: University of Michigan
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2992
• Total Scaffold Genes: 10
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 9 (90.00%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater, Plankton → Harmful Algal Blooms In Lake Erie

Source Dataset Sampling Location

• Location Name: Lake Erie, USA
• Coordinates
  • Lat. (^o): 41.7635
  • Long. (^o): -83.3309
  • Depth (m): 4.9

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000263	Metagenome / Metatranscriptome	1424	Y
F002387	Metagenome / Metatranscriptome	565	Y
F009685	Metagenome / Metatranscriptome	314	Y
F033433	Metagenome / Metatranscriptome	177	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0114340_10220542	F002387	AGGAGG	MASFLEDVNQMVIDACYQDIAEQLLEQWINNNLDEGQYYADKQFAEMSGDEFIQSEFNKFYNLNEGDEDYLC*
Ga0114340_10220545	F000263	GGA	MNAEDIGLPPHLQRMVNADVPGIDIMHGELKNLMLIAEQDLKDALEQEERSEEAMDSMVRTECEGRLDTLVELYKLTYDLSFAIGVREENKKDGH*
Ga0114340_10220546	F033433	AGAAGG	MYNKPSLEIIEVNYSCSPGGVDEFEVYSTDERDFADYPLYSSESLAKAVEYCYQLGKDFTVRTVAEWEERELAYEARG*
Ga0114340_10220548	F009685	GAGG	MKMSDQYVDSVLAEAQRLLWGGSETENIEAHNLISNLIRERVEQKNLN*