Scaffold Ga0114340_1021726

Overview

Basic Information

• Taxon OID: 3300008107
• Scaffold ID: Ga0114340_1021726
• Source Dataset Name: Freshwater microbial communities from Harmful Algal Blooms in Lake Erie, Western Basin, USA - Station WLE2, Sample E2014-0046-3-NA
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: University of Michigan
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 4077
• Total Scaffold Genes: 16
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 13 (81.25%)
• Novel Protein Genes: 6
• Novel Protein Genes with Ribosome Binding Sites (RBS): 5 (83.33%)
• Associated Families: 6

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater, Plankton → Harmful Algal Blooms In Lake Erie

Source Dataset Sampling Location

• Location Name: Lake Erie, USA
• Coordinates
  • Lat. (^o): 41.7635
  • Long. (^o): -83.3309
  • Depth (m): 4.9

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000821	Metagenome / Metatranscriptome	876	Y
F003212	Metagenome / Metatranscriptome	500	Y
F018135	Metagenome	236	Y
F027417	Metagenome	194	Y
F040479	Metagenome	161	Y
F044984	Metagenome / Metatranscriptome	153	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0114340_102172615	F018135	GGAG	MTVTKVKSNGAYVLSDLVGTGAGEYLFTRTYYGYTLAQAKAQFKIELKEAK*
Ga0114340_10217263	F040479	N/A	LLAQETLRANQEARLLELLNSLESVVDNLNFKSFTVYDTLITAMEGVRVALSATPIDEAGTDADRS*
Ga0114340_10217264	F044984	GGAGG	MTDEVKRRPRLAHLYPDTYKQLLEMEKKQDELQGKKWISIDGTTVLTVGVHTRATGADDLAYASNAGENEGNNGGEA*
Ga0114340_10217266	F000821	AGGAGG	MNREYLEAKVDLCLNQAEIDLQQEEIARAIANLRRANSALTQLFGFEEEEDQ*
Ga0114340_10217268	F003212	AGGAGG	MKDRYLVTLEIETYDGDPRWWDWEKLSTGEDVIKIISSDFKGRVFPEEGESNE*
Ga0114340_10217269	F027417	AGGAGG	MNYNYRVTFVTDYLTITTNVCLELDDTTGNLSDEAYGRAAVKGMNNIEDEIGKIDETIINDITVTLILDDEEVELNEG*