Scaffold Ga0114340_1020987

Overview

Basic Information

• Taxon OID: 3300008107
• Scaffold ID: Ga0114340_1020987
• Source Dataset Name: Freshwater microbial communities from Harmful Algal Blooms in Lake Erie, Western Basin, USA - Station WLE2, Sample E2014-0046-3-NA
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: University of Michigan
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 4982
• Total Scaffold Genes: 20
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 14 (70.00%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater, Plankton → Harmful Algal Blooms In Lake Erie

Source Dataset Sampling Location

• Location Name: Lake Erie, USA
• Coordinates
  • Lat. (^o): 41.7635
  • Long. (^o): -83.3309
  • Depth (m): 4.9

Associated Families

Family	Category	Number of Sequences	3D Structure?
F013514	Metagenome / Metatranscriptome	270	Y
F016800	Metagenome / Metatranscriptome	244	Y
F057309	Metagenome / Metatranscriptome	136	Y
F099191	Metagenome / Metatranscriptome	103	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0114340_102098710	F099191	N/A	MKRNNFDFTDAWIAVITGGVVLVLLAAPITGVMKVITTQQALNEQCGTNYNFFQVATAGDNLSRLCQIKNQTVTIK*
Ga0114340_10209875	F057309	GGAG	MTNPLIDKYNEIYGKKEKPKLPRIEDYEGEETFADELKKSKPPILKSYDLDDLKTSFQQVAEQLQNDKAQVISMNMEFGDHMNKMTFEVYVYKP*
Ga0114340_10209876	F013514	GAGG	MSINLEELQKYLDDNNITLEEYMRANMITDEDRKYFDKIWVDTIYKNLSEDT*
Ga0114340_10209877	F016800	AGGA	MLDAFTDYPIPSYGDIEGEKAPIRRATILTYDRNKYCDVLVYQVDKDGDLRGTVVNFKQFYLYKNEARLDDGIPFTYAELKTLPLTEISSPHSI*