Scaffold Ga0114340_1014318

Overview

Basic Information

• Taxon OID: 3300008107
• Scaffold ID: Ga0114340_1014318
• Source Dataset Name: Freshwater microbial communities from Harmful Algal Blooms in Lake Erie, Western Basin, USA - Station WLE2, Sample E2014-0046-3-NA
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: University of Michigan
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 6849
• Total Scaffold Genes: 19
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (21.05%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater, Plankton → Harmful Algal Blooms In Lake Erie

Source Dataset Sampling Location

• Location Name: Lake Erie, USA
• Coordinates
  • Lat. (^o): 41.7635
  • Long. (^o): -83.3309
  • Depth (m): 4.9

Associated Families

Family	Category	Number of Sequences	3D Structure?
F012978	Metagenome / Metatranscriptome	275	Y
F016809	Metagenome / Metatranscriptome	244	Y
F022884	Metagenome / Metatranscriptome	212	Y
F042325	Metagenome	158	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0114340_10143181	F016809	N/A	MAKSNEAFMKQQLTGSIGGGDEDYLYEQYLAQEKMNEEYWQWKSVQSHSIFPEGMEYDDEYYKSTYTPTIEEQLELDELLKKQNGHT*
Ga0114340_101431818	F022884	N/A	MLTINNLNKIVRYPIGYSFRVKSMVCGHTNYHISLIDGKGGCRDLKLNRMKGRRGKYTMSHGNYSLYLKFSDIQNIDLFCKQIKRLLC*
Ga0114340_101431819	F042325	N/A	MLTIDNIEKIEGNKIHTQHAHWVVMSIEERKHDYIIKVRFDYGITLGVKHPKYVNFKLLRYNEFSSTLNEWRLYNDQDNGYTTLTKGLLNFRIFV
Ga0114340_10143183	F012978	N/A	MKFNKTDDELKHMSEDELFEYLDAKAAHLKQYTSPLSSYKTKKFASIGAAISQTEFDYDSVKQIAKENEQKGYEKFIKDKNKK*