Scaffold Ga0114340_1012903

Overview

Basic Information

• Taxon OID: 3300008107
• Scaffold ID: Ga0114340_1012903
• Source Dataset Name: Freshwater microbial communities from Harmful Algal Blooms in Lake Erie, Western Basin, USA - Station WLE2, Sample E2014-0046-3-NA
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: University of Michigan
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 5830
• Total Scaffold Genes: 14
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 11 (78.57%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (60.00%)
• Associated Families: 5

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater, Plankton → Harmful Algal Blooms In Lake Erie

Source Dataset Sampling Location

• Location Name: Lake Erie, USA
• Coordinates
  • Lat. (^o): 41.7635
  • Long. (^o): -83.3309
  • Depth (m): 4.9

Associated Families

Family	Category	Number of Sequences	3D Structure?
F010821	Metagenome	298	Y
F029755	Metagenome	187	Y
F048674	Metagenome	148	Y
F051918	Metagenome	143	Y
F065786	Metagenome	127	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0114340_10129031	F048674	N/A	TVRPIVTYIFIFELCAINAWIAYYVYSRPSLVTNMDDLIRVSDVIFSSDEMAMLGGIIGFWFGSRSWAKK*
Ga0114340_101290310	F010821	AGGAGG	MTDFTFSPADFNATEITVVANTPDAKEYLAERYGFACVSINIRKSAAPDLADSFEFQGLSYS*
Ga0114340_10129033	F065786	AGG	MTKDDLISLLRMTGAQEASIDAVCAAYDAGWNDALDDYVKRLEALSFGKDTIDSFSVFIRSAKK*
Ga0114340_10129038	F051918	N/A	MEGLTMLDLIKDYFRLPSAKEIAAKELESAQRKLLDALSAQEYARRMADYHSDRIKRLTAYLKEEA*
Ga0114340_10129039	F029755	AGGA	MTEFKLHYYFDDVVSYDNGTTLENVKVGYDYYPAEINMPHDHNSAEIYDVFVFNLKGDDISCDLPLSEFQHIMSETKIHHARMLKEKNEI*