Scaffold Ga0114340_1012866

Overview

Basic Information

• Taxon OID: 3300008107
• Scaffold ID: Ga0114340_1012866
• Source Dataset Name: Freshwater microbial communities from Harmful Algal Blooms in Lake Erie, Western Basin, USA - Station WLE2, Sample E2014-0046-3-NA
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: University of Michigan
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 4090
• Total Scaffold Genes: 14
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 13 (92.86%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater, Plankton → Harmful Algal Blooms In Lake Erie

Source Dataset Sampling Location

• Location Name: Lake Erie, USA
• Coordinates
  • Lat. (^o): 41.7635
  • Long. (^o): -83.3309
  • Depth (m): 4.9

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001176	Metagenome / Metatranscriptome	756	Y
F001280	Metagenome / Metatranscriptome	732	Y
F035764	Metagenome / Metatranscriptome	171	Y
F039131	Metagenome / Metatranscriptome	164	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0114340_101286613	F035764	AGGAG	MIDWLVNRLFWWTPLRNALLAEATFYNSLTRVMKDPEAMKTASAFWDEGDGWRGWTIEDNKYYFNDVPEHDLMGIIQSLEEMHEQRPL*
Ga0114340_10128662	F039131	N/A	MIEYTMAQDDIYELEGYFERKYIKQIIDQINNFEFPNDWTPKQVIDYITYKIDRK*
Ga0114340_10128665	F001280	GGCGG	MCVECGCESVGSEAGINMIPGGMLNVSTDGEAGLTLSMTATPEQRERFISGE*
Ga0114340_10128666	F001176	GAG	VSDNGTGMSTPPNNQPSGAVTSQEATRKNPSQGKFKSGFSSPRPPTKVDTNKHGIRRETVLGQKKVRPKKD*