Scaffold Ga0114340_1012492

Overview

Basic Information

• Taxon OID: 3300008107
• Scaffold ID: Ga0114340_1012492
• Source Dataset Name: Freshwater microbial communities from Harmful Algal Blooms in Lake Erie, Western Basin, USA - Station WLE2, Sample E2014-0046-3-NA
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: University of Michigan
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 9571
• Total Scaffold Genes: 27
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 18 (66.67%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (50.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater, Plankton → Harmful Algal Blooms In Lake Erie

Source Dataset Sampling Location

• Location Name: Lake Erie, USA
• Coordinates
  • Lat. (^o): 41.7635
  • Long. (^o): -83.3309
  • Depth (m): 4.9

Associated Families

Family	Category	Number of Sequences	3D Structure?
F006698	Metagenome / Metatranscriptome	366	Y
F008493	Metagenome / Metatranscriptome	332	Y
F073536	Metagenome / Metatranscriptome	120	Y
F105150	Metagenome / Metatranscriptome	100	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0114340_101249219	F006698	AGGA	MTRYYDELAVYERNGFDIIVDKSYEDLDPKDCFDDECFDLKEMYADIESGNLDWFMLRVRVMVENIELSSEFLGGCLYKDAKEVLTDGTAEDLIDMALTEAKKDVYRLYKKFQDISWELDAEGVTV*
Ga0114340_101249221	F105150	GGA	MYRFVCQMFYKDRLYSGHYWGDEYSKARACKAMAELQRYRPGMRFVLTDYKTGAIIKTTEYEPKQYYIKERTYA*
Ga0114340_101249224	F008493	N/A	MTSERGDSYIGLTRKSLPNADKVVAERWRKHKSRAKNENRLWALYIYLKSGGLDMTWTHTVIDIVRGRKEAYAYERELVKLFEPELNDQYL*
Ga0114340_10124924	F073536	N/A	MIWVQYEVWGVEEDGHEELIETTNSLKEARKIAEDSLTDQIVECIIYKEEDGELYEEEVIAKE*