Scaffold Ga0114340_1011377

Overview

Basic Information

• Taxon OID: 3300008107
• Scaffold ID: Ga0114340_1011377
• Source Dataset Name: Freshwater microbial communities from Harmful Algal Blooms in Lake Erie, Western Basin, USA - Station WLE2, Sample E2014-0046-3-NA
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: University of Michigan
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 7632
• Total Scaffold Genes: 19
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 18 (94.74%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater, Plankton → Harmful Algal Blooms In Lake Erie

Source Dataset Sampling Location

• Location Name: Lake Erie, USA
• Coordinates
  • Lat. (^o): 41.7635
  • Long. (^o): -83.3309
  • Depth (m): 4.9

Associated Families

Family	Category	Number of Sequences	3D Structure?
F004231	Metagenome	447	Y
F011580	Metagenome	289	Y
F014489	Metagenome	262	N
F063332	Metagenome	129	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0114340_10113771	F004231	AGGAG	MSVKPKDFQHEICVYLEGIGECLVCFDILTPGDELDADHSDDYEIDFSVFDEQDKHITYDITKKQYNHCENKAMDEMRDITTQWHKEWETSFD*
Ga0114340_101137712	F011580	AGG	MTQSQALTNALILALIAPSDEKASQASELAESIAKGLDFAEVEQCKADALAIIEATA*
Ga0114340_101137714	F063332	GAGG	MTEPKELDQIKAFVLGLIAGIKDTHSPEEADRHLEDYWNSWDSTIDINIWIDDSDPQKYLATLYRVVDGIRDDETFQRLDYFLE*
Ga0114340_10113772	F014489	AGGAG	MEMKQQHYAILKRLQHGASSLKRFTDKDGEVGNQGFHYLRYLNDLQNFGYALEIGDVWHITGFGVAKLAEQKPRVSKERVAAGTTTETYDGADLKQSGIREGAFDFLKYPSKFGDNLVFPRVSV*