Scaffold Ga0114340_1010544

Overview

Basic Information

• Taxon OID: 3300008107
• Scaffold ID: Ga0114340_1010544
• Source Dataset Name: Freshwater microbial communities from Harmful Algal Blooms in Lake Erie, Western Basin, USA - Station WLE2, Sample E2014-0046-3-NA
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: University of Michigan
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 4596
• Total Scaffold Genes: 14
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 10 (71.43%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Associated Families: 4

Taxonomy: All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Nitrosomonadales → Methylophilaceae → unclassified Methylophilaceae → Methylophilaceae bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater, Plankton → Harmful Algal Blooms In Lake Erie

Source Dataset Sampling Location

• Location Name: Lake Erie, USA
• Coordinates
  • Lat. (^o): 41.7635
  • Long. (^o): -83.3309
  • Depth (m): 4.9

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000473	Metagenome / Metatranscriptome	1097	Y
F000671	Metagenome / Metatranscriptome	945	Y
F010248	Metagenome / Metatranscriptome	306	Y
F013878	Metagenome / Metatranscriptome	267	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0114340_101054410	F000671	GAGG	MEKILCYSCNKSKNKLDVRKSSLMPINLLICETCNSAKLEPRWVVILAGRSNGPDHVKEFIIKRKYLGSEITASELLI*
Ga0114340_101054412	F000473	GAGG	MFIDKSADKQREHFKYGINHWTGEPNKPVFYTEEMKKAVHQVKKPAMLLMDIVMYPDFLALRLYEDNFLQFDGTKKEMVIDYVTKVKRLLESYGVRCELEGRPSDRVL*
Ga0114340_101054414	F013878	AGGA	MLNLTELGVEVFIKKAKNVTPYWDNYDLVIWRKDSGGFTNIKGMFRENAWGIAERIAITDNGIWKLPTKYVRNFK*
Ga0114340_10105446	F010248	GAG	MRKSERIRLLEMEMLRMQFQIEYLNTAVRLLLEENKVSGPDMDAGKWYAAKLNKNK*