Scaffold Ga0114340_1009413

Overview

Basic Information

• Taxon OID: 3300008107
• Scaffold ID: Ga0114340_1009413
• Source Dataset Name: Freshwater microbial communities from Harmful Algal Blooms in Lake Erie, Western Basin, USA - Station WLE2, Sample E2014-0046-3-NA
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: University of Michigan
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 9617
• Total Scaffold Genes: 25
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 21 (84.00%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (80.00%)
• Associated Families: 5

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater, Plankton → Harmful Algal Blooms In Lake Erie

Source Dataset Sampling Location

• Location Name: Lake Erie, USA
• Coordinates
  • Lat. (^o): 41.7635
  • Long. (^o): -83.3309
  • Depth (m): 4.9

Associated Families

Family	Category	Number of Sequences	3D Structure?
F003658	Metagenome	474	Y
F020684	Metagenome	222	Y
F020863	Metagenome	221	Y
F029046	Metagenome	189	Y
F085348	Metagenome	111	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0114340_100941314	F003658	AGGA	MFDLTGEPTMACICGCLMFEITVMWEQEDRTIGWYDLRQKCKDCGSISTAPTPIDGEI*
Ga0114340_10094132	F085348	AGGAG	MSQPTGIALKVTGKDGHVSFPAYEAWGWEKINAVIQGTLDIEHVAKVEIVDINFKA*
Ga0114340_100941322	F020684	GAG	MWVYSLSPNEEATVVEVGYQRQKPYFGDPIRNINYSEGDLWEMWQHVVCAGSELAFARMVGKKDFIPHYNKWKSELDIPDLGEVRYSFPPIRGLRYTTRDEDSLIYVLTTGGLCNKERRVGPDWKGPEYAAVGWMYGKDCKKDEWKYNEKTWYVPIESLNEMETLPNGITVAQA*
Ga0114340_10094133	F020863	N/A	MEDLHRLVAVLEELVKPLFEGENVEDVYESMKRPHLALEEGSKTYGRAYRIFFTGGSKYGSGHWEPRGFSDYLGGTKAEAERTLRNLIAGIRTGQMIAEKGAK*
Ga0114340_10094134	F029046	AGG	MRLQEIDTIQDLKEWVIENMPNADVYEDMYGTLVIRTNLGVAMGGYLFDKSEAE*