Scaffold Ga0114340_1009142

Overview

Basic Information

• Taxon OID: 3300008107
• Scaffold ID: Ga0114340_1009142
• Source Dataset Name: Freshwater microbial communities from Harmful Algal Blooms in Lake Erie, Western Basin, USA - Station WLE2, Sample E2014-0046-3-NA
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: University of Michigan
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 5005
• Total Scaffold Genes: 17
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 16 (94.12%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 5 (100.00%)
• Associated Families: 5

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater, Plankton → Harmful Algal Blooms In Lake Erie

Source Dataset Sampling Location

• Location Name: Lake Erie, USA
• Coordinates
  • Lat. (^o): 41.7635
  • Long. (^o): -83.3309
  • Depth (m): 4.9

Associated Families

Family	Category	Number of Sequences	3D Structure?
F029046	Metagenome	189	Y
F033321	Metagenome	177	Y
F075715	Metagenome	118	N
F075748	Metagenome	118	Y
F093236	Metagenome	106	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0114340_100914211	F033321	GAGG	MSRELEVLREEYKRAVDNPLFDDPKDYCVLLDLIQDRISLLEGESNE*
Ga0114340_100914212	F075715	AGGAG	MNKEYLAAKADLCKDLAIEQLTAGNSEEGVKNLKRMIRALEEINLINYLEERRGRE*
Ga0114340_100914216	F093236	GGA	VRAGLTTSQITQDQQLSELLSSLESVVESLNYKSFTLYDTLNTAIEEISAALSNILTEEGGTDEYMPTV*
Ga0114340_10091427	F029046	GAGG	MQLQEIDTLQDLKVWVEENMAGAEVYEDMYGTLVIRTNLISTMGGYLYEREGE*
Ga0114340_10091428	F075748	GAGG	MLSKREILEIIDSTANFRAYIEDIDSLDGQSLDLVTQVIGVDGQEWTDEECLEIIKEIIDLSSAYRNTHKWNNG*