Scaffold Ga0114340_1008875

Overview

Basic Information

• Taxon OID: 3300008107
• Scaffold ID: Ga0114340_1008875
• Source Dataset Name: Freshwater microbial communities from Harmful Algal Blooms in Lake Erie, Western Basin, USA - Station WLE2, Sample E2014-0046-3-NA
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: University of Michigan
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 6668
• Total Scaffold Genes: 17
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 13 (76.47%)
• Novel Protein Genes: 8
• Novel Protein Genes with Ribosome Binding Sites (RBS): 6 (75.00%)
• Associated Families: 8

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater, Plankton → Harmful Algal Blooms In Lake Erie

Source Dataset Sampling Location

• Location Name: Lake Erie, USA
• Coordinates
  • Lat. (^o): 41.7635
  • Long. (^o): -83.3309
  • Depth (m): 4.9

Associated Families

Family	Category	Number of Sequences	3D Structure?
F004476	Metagenome / Metatranscriptome	436	Y
F004669	Metagenome	428	N
F011390	Metagenome	291	Y
F015209	Metagenome	256	N
F027516	Metagenome	194	Y
F033793	Metagenome / Metatranscriptome	176	N
F039133	Metagenome	164	N
F057375	Metagenome	136	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0114340_100887510	F011390	GAG	MKDMEITTTNYGVCKVKKHKYQTNGNLALSLVDESGQPVVYITTNIFPMAEDEFCANYYNMGATLWNDIVTSGLFEMTGEKVPSGYCEYPVCKLVKELA*
Ga0114340_100887512	F033793	GAG	MILGQDPFSTRPIGTEKSLKEAKAYILTKAYNNDYCAIYVADNENPAGELVGRWIIKNKKFTSYEKKPKAVDYKKSIF*
Ga0114340_100887515	F004669	N/A	MENTTMKLWEIKNFQSSSVKSLFVGQTANGQDCIACAWNSSELYVFAYEGIVDTFLWALETFQSVGQAMAYAKLKNGMEDRSYSLPYHVTMEQRTHNQLYRFQLQYLHIFEGTLEIHSNLCDDTPENAIKNLISRGDIEAENSRLIDIFRKREVCA*
Ga0114340_100887517	F004476	N/A	FSRNGFKTVDNTEEFVKQVLEFGQKDLVLSVTHSNGVIDIVVSPTMDAIEADIYHFLDDETELKYTLPIKSLTANYISTLSLTSAIHAYISEAFKVAEIFKNTTRQSTDYAK*
Ga0114340_10088755	F015209	AGG	MSDYRIKALSLWSNLLAEERWHKFENTNCKPSCKGWNGWAPYCECGSNFCTFKPNGELADMVLVIEARPLDF*
Ga0114340_10088757	F039133	AGGA	MNTTDKVIVRFKSRVPKMLYTAHYNGLLLGSSTNAQDLGEYYACKYSTEWILQDGNNFYTQRGVNR*
Ga0114340_10088758	F057375	AGGAGG	MAETVYFVNASDVFEAIELGDFEQGQFLDQFTFGDSLTDLTLIKKQTFVNRLVKFIADCEDVYEKDVVMQNLKEYNFGLLDCIKHVNIEE*
Ga0114340_10088759	F027516	AGG	MKMTYAQYLAKCEVAKTVFQCGVTAALSVEIATPEQRLGWIAEDLKKLETELEEIGKTFDEQDEIGDPFAEEAK*