Scaffold Ga0114340_1008693

Overview

Basic Information

• Taxon OID: 3300008107
• Scaffold ID: Ga0114340_1008693
• Source Dataset Name: Freshwater microbial communities from Harmful Algal Blooms in Lake Erie, Western Basin, USA - Station WLE2, Sample E2014-0046-3-NA
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: University of Michigan
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 6562
• Total Scaffold Genes: 15
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (20.00%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (40.00%)
• Associated Families: 5

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater, Plankton → Harmful Algal Blooms In Lake Erie

Source Dataset Sampling Location

• Location Name: Lake Erie, USA
• Coordinates
  • Lat. (^o): 41.7635
  • Long. (^o): -83.3309
  • Depth (m): 4.9

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000785	Metagenome / Metatranscriptome	891	Y
F001754	Metagenome / Metatranscriptome	641	Y
F013298	Metagenome / Metatranscriptome	272	Y
F054034	Metagenome	140	N
F066783	Metagenome / Metatranscriptome	126	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0114340_10086931	F054034	GGA	MLTISGYKKLEGLVLKDGLKVETINEFDDRYSIWLSDKINIELERKVHWENHRYRYYKTYIGTFASNAMTEFVMTRTINTLDRMKAHLIYIHEKYITK*
Ga0114340_100869312	F001754	N/A	MSNNPKFEVVVTFKDFLGKTHNIVCRNRRKLAEANEFLKMFKTESVKINKILSEYPVVMGQFPKKYHKEIRMELNSAGFGSVANFLIK*
Ga0114340_100869313	F013298	N/A	MGTFYFKLSTMNIREFYVKNYPTDDMGKGINPNATFDGLWKILNTYGDVYEYLYVYDSIIRERLFEKLASNKGCDYDVIYQQWLRA*
Ga0114340_100869314	F066783	N/A	MNMNQTTEKLVSIFTQNELSALMTAMGGYINTKNKQKRPTGVETVLFNKIVDALLVCNYMNAVEMVNTKTNRMGAAEYKMSEAQLEAMYESDVRAHR*
Ga0114340_10086936	F000785	AGGA	MRVTNKRGMKFDCNRLMRWAEEKLGPSKCTAIAFTWDIEEESLGWYDWEKTIWINLAHCKRMISVQKTLLHEWTHAQQTFRWYNHYQLTYGYKNNPYEIEARENEKLVKRAYKKSK*