Scaffold Ga0114340_1008459

Overview

Basic Information

• Taxon OID: 3300008107
• Scaffold ID: Ga0114340_1008459
• Source Dataset Name: Freshwater microbial communities from Harmful Algal Blooms in Lake Erie, Western Basin, USA - Station WLE2, Sample E2014-0046-3-NA
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: University of Michigan
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 5235
• Total Scaffold Genes: 13
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (7.69%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (25.00%)
• Associated Families: 4

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater, Plankton → Harmful Algal Blooms In Lake Erie

Source Dataset Sampling Location

• Location Name: Lake Erie, USA
• Coordinates
  • Lat. (^o): 41.7635
  • Long. (^o): -83.3309
  • Depth (m): 4.9

Associated Families

Family	Category	Number of Sequences	3D Structure?
F039943	Metagenome / Metatranscriptome	162	Y
F065418	Metagenome	127	N
F067397	Metagenome / Metatranscriptome	125	N
F070857	Metagenome	122	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0114340_100845910	F067397	N/A	MKELYYELLQANNGEIPQEATIADLARMNDLKIFEWREYERSQNNIKKPKNEGDIKGQQS
Ga0114340_100845911	F039943	N/A	MKEISKDSSLNEHRQEKEYGWKPIPSKKKSVRKKSEYNYAFVGIIIGLTMGILTSIFMYKDSQRCNLLLEENKLLKEMLYYKEINK*
Ga0114340_10084597	F070857	AGAAG	MKVICIDNSKKPKNIPIEEWVKEGDTYTVTRIVRMGLQKETYGFLLKEVQLSSRSFPYELYDASRFLPIELLSNMKEEKKEEVIIEEACLELI*
Ga0114340_10084599	F065418	N/A	MEYTVNDILKECDALVYEFQNSPKKRLRPMLDKRNYLIAILYYKFGYTEEKISTIYNIKRVSVSVSKKHAYSLLEYGDNVFKENIKDYLIKYPYDFPNFSNKYKKDIGITIYFDNKTLEKIRAYRDIINEKSTAKTIKRLVTNGLKLWGK*