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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| Taxon OID | 3300008107 Open in IMG/M |
| Scaffold ID | Ga0114340_1008349 Open in IMG/M |
| Source Dataset Name | Freshwater microbial communities from Harmful Algal Blooms in Lake Erie, Western Basin, USA - Station WLE2, Sample E2014-0046-3-NA |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | University of Michigan |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 5277 |
| Total Scaffold Genes | 15 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 13 (86.67%) |
| Novel Protein Genes | 7 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 7 (100.00%) |
| Associated Families | 7 |
| Taxonomy | |
|---|---|
| All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage | (Source: UniRef50) |
| Source Dataset Ecosystem |
|---|
| Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater, Plankton → Harmful Algal Blooms In Lake Erie |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | Lake Erie, USA | |||||||
| Coordinates | Lat. (o) | 41.7635 | Long. (o) | -83.3309 | Alt. (m) | Depth (m) | 4.9 | Location on Map |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F000263 | Metagenome / Metatranscriptome | 1424 | Y |
| F000311 | Metagenome / Metatranscriptome | 1326 | Y |
| F000441 | Metagenome / Metatranscriptome | 1136 | Y |
| F000852 | Metagenome / Metatranscriptome | 860 | Y |
| F001125 | Metagenome / Metatranscriptome | 769 | Y |
| F021288 | Metagenome / Metatranscriptome | 219 | Y |
| F084239 | Metagenome / Metatranscriptome | 112 | N |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0114340_100834910 | F001125 | GGCGG | MGDRANFGFKDRKGDTVFLYGHWAGYNMLENLANAVEAARPRWNDESYATRIAISRMVGEEWESETGWGISVNQLADNEHKVPVIDWAAKTFTLMEEDLETVVFSLTIDEFVNKYSRLVMV* |
| Ga0114340_100834913 | F000311 | GGAG | MYFELTAPNQVAFARATWDAEMIGLDPQAIGPLTFNVGTGSIEKVSRIRDKYNLVESYTSDYEPTGYTGR* |
| Ga0114340_10083492 | F000852 | GGA | MTTKREYLKSQGITVGARGRFSGAAKVAIQEAESKGMKFTAETPVNKAK* |
| Ga0114340_10083493 | F000441 | AGGAGG | MSDVYINDQLNKAQQLLWGGSETENIEAHNIISKLIKDRVEQVNL* |
| Ga0114340_10083495 | F000263 | AGG | MNSEDIGLPPHMQRMVNAGVSGLDIIHGELKNLMLIAERDLARAQEQEDESEEAMDSMERTRCEGALDTLVELYQLTYQLAFAIGERDEA* |
| Ga0114340_10083496 | F084239 | GAGG | MSKSSKFMEYMKLHLISLEQDLEKIDYVNGHHFYKVKQAEIETTRHLLSVATDIMKSSNERYE* |
| Ga0114340_10083497 | F021288 | GAGG | MLGYTQRDLADMTYGVYQADLLIDADENPAIHNYLVSAHDFLQGLWAEGYFDHA* |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |