Scaffold Ga0114340_1008225

Overview

Basic Information

• Taxon OID: 3300008107
• Scaffold ID: Ga0114340_1008225
• Source Dataset Name: Freshwater microbial communities from Harmful Algal Blooms in Lake Erie, Western Basin, USA - Station WLE2, Sample E2014-0046-3-NA
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: University of Michigan
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 14053
• Total Scaffold Genes: 39
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 32 (82.05%)
• Novel Protein Genes: 13
• Novel Protein Genes with Ribosome Binding Sites (RBS): 12 (92.31%)
• Associated Families: 13

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater, Plankton → Harmful Algal Blooms In Lake Erie

Source Dataset Sampling Location

• Location Name: Lake Erie, USA
• Coordinates
  • Lat. (^o): 41.7635
  • Long. (^o): -83.3309
  • Depth (m): 4.9

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000263	Metagenome / Metatranscriptome	1424	Y
F000441	Metagenome / Metatranscriptome	1136	Y
F000450	Metagenome / Metatranscriptome	1126	Y
F000473	Metagenome / Metatranscriptome	1097	Y
F000671	Metagenome / Metatranscriptome	945	Y
F001019	Metagenome / Metatranscriptome	804	Y
F001176	Metagenome / Metatranscriptome	756	Y
F001507	Metagenome / Metatranscriptome	681	Y
F003582	Metagenome / Metatranscriptome	478	Y
F004666	Metagenome / Metatranscriptome	428	Y
F007470	Metagenome / Metatranscriptome	350	Y
F042904	Metagenome / Metatranscriptome	157	Y
F105019	Metagenome / Metatranscriptome	100	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0114340_10082251	F003582	N/A	MKTYKVKLEVNAEVQAFSEDDAVEYINDIFGIDDEVKNVKVVTVKEK*
Ga0114340_100822511	F042904	AGAAG	MSNQQTVLEGIIEDVATDLYNKWVKALPEDEKNDVAFQAMSKNAQETTLFVIQEFMNKFNAAAAELKDQ*
Ga0114340_100822516	F105019	AGAAG	MAKHHDKIAKSLEIRRANWKNPAGKAPGSMNKKKTGYNRQKANGAK*
Ga0114340_100822520	F001176	AGGA	LTNGTGMDTPPNNTPSGAVTSQEAGRKNPSQGKFRSGINNQRSLTRIDTNKHGIRRETSMQPRKTKPKKV*
Ga0114340_100822528	F004666	AGGAG	MTSKREYLASKGITVGRRGRFSAAAKQALSEAEKNGIKFTAEAVQPKK*
Ga0114340_100822530	F001019	AGGAGG	MSDYEPTLEIVEIEYSCSPGGVDSYEVYDKTDIPLSIPIYETESLTDAVQYCYNLGQDFIVRTVAAWHRNEDVYANI*
Ga0114340_100822531	F000441	AGGAGG	MSDEYINTELNKAQKLLWGGSETENIEAHNIISRLIKERMAWKEGNNE*
Ga0114340_100822533	F000263	AGG	METLELPPHLQRMVNYDINGLDIMHGELKNLMLIWEKELEKAQAIEDESEEAMDSMERKYCEGFLDALTALYHLTYQLSFAIGERNDK*
Ga0114340_100822535	F001507	AGGTGG	MKTIDKPYTIDELITNIYEDNYSHIEFIENMNGGDCDCNIHNAMNLIQEYM*
Ga0114340_100822537	F000450	AGGCGG	MGDRANFGFVQPNGETIVLYGHWAGHQMLGKLADAIITARPRWQDPSYATRITISQLIGDQWNMETGWGLHVNEISDNEHKIAIVDWSQQTFSLHEEDDFRNTDNKVRGMKNQAIFTMDLSSFCEKYAVNELFTFVN*
Ga0114340_100822539	F007470	AGGAG	MDYQDGFEDGIKFAREVIINNIRLWAETSEDGAAYDDIADRLEFGKVDYDL*
Ga0114340_10082255	F000473	AGG	MFIDKSIDKQNEHFKYGINQWTGEPNKPVFYNDEMKKKVREIKKPVSNLMMDVVMYPEFLSLRLYEDNFIQYVGVQKEMVIDYVSKVKKLIESYGVRCELEGVPSERVL*
Ga0114340_10082257	F000671	GGAGG	MDKILCYSCNKTKNKLNAKKSILLPINLLMCETCINSKLEPRWVVILAGRQNGMDYVKDFVVKRRYIGNEIAASELII*