Basic Information | |
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Taxon OID | 3300008107 Open in IMG/M |
Scaffold ID | Ga0114340_1008089 Open in IMG/M |
Source Dataset Name | Freshwater microbial communities from Harmful Algal Blooms in Lake Erie, Western Basin, USA - Station WLE2, Sample E2014-0046-3-NA |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | University of Michigan |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 6180 |
Total Scaffold Genes | 21 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 20 (95.24%) |
Novel Protein Genes | 8 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 8 (100.00%) |
Associated Families | 8 |
Taxonomy | |
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All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage | (Source: UniRef50) |
Source Dataset Ecosystem |
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Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater, Plankton → Harmful Algal Blooms In Lake Erie |
Source Dataset Sampling Location | ||||||||
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Location Name | Lake Erie, USA | |||||||
Coordinates | Lat. (o) | 41.7635 | Long. (o) | -83.3309 | Alt. (m) | Depth (m) | 4.9 | Location on Map |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
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F000652 | Metagenome / Metatranscriptome | 959 | Y |
F004924 | Metagenome / Metatranscriptome | 418 | Y |
F004978 | Metagenome / Metatranscriptome | 416 | Y |
F006112 | Metagenome / Metatranscriptome | 381 | Y |
F009334 | Metagenome / Metatranscriptome | 319 | Y |
F018539 | Metagenome | 234 | Y |
F036696 | Metagenome | 169 | Y |
F043926 | Metagenome | 155 | Y |
Protein ID | Family | RBS | Sequence |
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Ga0114340_10080891 | F006112 | AGGAG | LKQDYTLYIYKADRRCKTGERLFSTTVWTGTDDNGMRRTVADMFDLYNPADGWRFDWTPSMKRVRNLMSGVEIEIPHDTPRSCDPSSELYWSM* |
Ga0114340_100808913 | F004978 | GAGG | MITAETLEALTSYSPQYLTRAAQLAGYKGPDFSSCRFLGITNGGQFCYTAVFHVKGGTDSTKIFLTYDHTENRVIADYHLTEVF* |
Ga0114340_100808914 | F009334 | AGGAG | MAKVDGQEVKVGDWVCFKADIEQSGQIVEIKKSYMGHSLVLENKNGFHGGYIGGQTITTELASDCWLEG* |
Ga0114340_100808916 | F000652 | AGGA | MTGFQSKRASALDKFKGQGMKKVIVRTELMQELEVPDDWEREHVLDFLGEFQSFRTAFQGVSNEDQTARIVDLGVVIETVEQLGEECFDE* |
Ga0114340_10080892 | F043926 | GGAG | MVKWECQMFYGNKLYSGHYWGDELSLARARRKVAELQRYHPAMRFVLTDWQKGSIIELHKRTKELA* |
Ga0114340_10080894 | F018539 | AGGA | MSTVYNANTAKAKVIYYKDKETYKIIFAFNVHKKVKDNGEIVHMFPTQAKCAYVSGDINYETLQADKERIIEQAKKTMRTNSVEFV* |
Ga0114340_10080896 | F036696 | AGGAG | MTKALNKRISEAFGKIYDMGDSGLDYMDKHSALDETLMEHFYNDTVETLSKADKTRMADMLEEIASDAEFDLESF* |
Ga0114340_10080897 | F004924 | AGGAG | VQDLYKQQILEKLREVEIMLMEATCDGEQLATLDCYSELDSPLSTLIEAVDYYVD* |
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