Scaffold Ga0114340_1008089

Overview

Basic Information

• Taxon OID: 3300008107
• Scaffold ID: Ga0114340_1008089
• Source Dataset Name: Freshwater microbial communities from Harmful Algal Blooms in Lake Erie, Western Basin, USA - Station WLE2, Sample E2014-0046-3-NA
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: University of Michigan
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 6180
• Total Scaffold Genes: 21
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 20 (95.24%)
• Novel Protein Genes: 8
• Novel Protein Genes with Ribosome Binding Sites (RBS): 8 (100.00%)
• Associated Families: 8

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater, Plankton → Harmful Algal Blooms In Lake Erie

Source Dataset Sampling Location

• Location Name: Lake Erie, USA
• Coordinates
  • Lat. (^o): 41.7635
  • Long. (^o): -83.3309
  • Depth (m): 4.9

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000652	Metagenome / Metatranscriptome	959	Y
F004924	Metagenome / Metatranscriptome	418	Y
F004978	Metagenome / Metatranscriptome	416	Y
F006112	Metagenome / Metatranscriptome	381	Y
F009334	Metagenome / Metatranscriptome	319	Y
F018539	Metagenome	234	Y
F036696	Metagenome	169	Y
F043926	Metagenome	155	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0114340_10080891	F006112	AGGAG	LKQDYTLYIYKADRRCKTGERLFSTTVWTGTDDNGMRRTVADMFDLYNPADGWRFDWTPSMKRVRNLMSGVEIEIPHDTPRSCDPSSELYWSM*
Ga0114340_100808913	F004978	GAGG	MITAETLEALTSYSPQYLTRAAQLAGYKGPDFSSCRFLGITNGGQFCYTAVFHVKGGTDSTKIFLTYDHTENRVIADYHLTEVF*
Ga0114340_100808914	F009334	AGGAG	MAKVDGQEVKVGDWVCFKADIEQSGQIVEIKKSYMGHSLVLENKNGFHGGYIGGQTITTELASDCWLEG*
Ga0114340_100808916	F000652	AGGA	MTGFQSKRASALDKFKGQGMKKVIVRTELMQELEVPDDWEREHVLDFLGEFQSFRTAFQGVSNEDQTARIVDLGVVIETVEQLGEECFDE*
Ga0114340_10080892	F043926	GGAG	MVKWECQMFYGNKLYSGHYWGDELSLARARRKVAELQRYHPAMRFVLTDWQKGSIIELHKRTKELA*
Ga0114340_10080894	F018539	AGGA	MSTVYNANTAKAKVIYYKDKETYKIIFAFNVHKKVKDNGEIVHMFPTQAKCAYVSGDINYETLQADKERIIEQAKKTMRTNSVEFV*
Ga0114340_10080896	F036696	AGGAG	MTKALNKRISEAFGKIYDMGDSGLDYMDKHSALDETLMEHFYNDTVETLSKADKTRMADMLEEIASDAEFDLESF*
Ga0114340_10080897	F004924	AGGAG	VQDLYKQQILEKLREVEIMLMEATCDGEQLATLDCYSELDSPLSTLIEAVDYYVD*