Scaffold Ga0114340_1007770

Overview

Basic Information

• Taxon OID: 3300008107
• Scaffold ID: Ga0114340_1007770
• Source Dataset Name: Freshwater microbial communities from Harmful Algal Blooms in Lake Erie, Western Basin, USA - Station WLE2, Sample E2014-0046-3-NA
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: University of Michigan
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 5504
• Total Scaffold Genes: 16
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (25.00%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (50.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater, Plankton → Harmful Algal Blooms In Lake Erie

Source Dataset Sampling Location

• Location Name: Lake Erie, USA
• Coordinates
  • Lat. (^o): 41.7635
  • Long. (^o): -83.3309
  • Depth (m): 4.9

Associated Families

Family	Category	Number of Sequences	3D Structure?
F034850	Metagenome	173	Y
F043829	Metagenome	155	Y
F059966	Metagenome	133	Y
F085713	Metagenome	111	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0114340_100777015	F034850	GGA	MEQDLVLGEEEEVEEIIEEITYSEYLHASVEVLTFLESANPMTKAEVKRVENLRKMCFEMLEFSVKSMHETLFNE*
Ga0114340_10077702	F059966	N/A	MAQKTTSSITEYIKGNQLRKNAKWLIRDGEWLFEMQNGIWGSQNLFDEFYPIYEYKKFNDKGVNPDKTKIR*
Ga0114340_10077706	F043829	N/A	MSEMQLPKWGDLNINERHKLLGELIDAMIYSGEAVQYLKVTVEQFRSMGYVRSVILPQNQLDEA*
Ga0114340_10077708	F085713	GAG	MGSSVVSCIHHLKLADEYAKDFVRSAPGTRGAVIFSDYSKRINWIFRDVITFPHFGDDVREGMRKEIASDAFSYDSLIEKIALLNPDQRENLEGLLDDILKGRTIEVNITT*