Scaffold Ga0114340_1007175

Overview

Basic Information

• Taxon OID: 3300008107
• Scaffold ID: Ga0114340_1007175
• Source Dataset Name: Freshwater microbial communities from Harmful Algal Blooms in Lake Erie, Western Basin, USA - Station WLE2, Sample E2014-0046-3-NA
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: University of Michigan
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 5769
• Total Scaffold Genes: 13
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 10 (76.92%)
• Novel Protein Genes: 7
• Novel Protein Genes with Ribosome Binding Sites (RBS): 6 (85.71%)
• Associated Families: 7

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater, Plankton → Harmful Algal Blooms In Lake Erie

Source Dataset Sampling Location

• Location Name: Lake Erie, USA
• Coordinates
  • Lat. (^o): 41.7635
  • Long. (^o): -83.3309
  • Depth (m): 4.9

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000714	Metagenome / Metatranscriptome	924	Y
F000852	Metagenome / Metatranscriptome	860	Y
F001043	Metagenome / Metatranscriptome	794	Y
F001125	Metagenome / Metatranscriptome	769	Y
F001781	Metagenome / Metatranscriptome	635	Y
F021288	Metagenome / Metatranscriptome	219	Y
F022414	Metagenome / Metatranscriptome	214	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0114340_100717511	F001781	AGGA	MKPDDKDKLNKCLDILDTTDLGLSMVWLWTWSTIKSFMQDDTFIMKKTEDEMWDCLCEAVEAGMGFSLEYGAEQHYEDVMEWMLNREYMVDSMFEEEEAEDEDE*
Ga0114340_100717512	F000852	AGGA	MTTKREYLKQQGITVGVRGRFSGAAKVALQEAIAKGITFTADQPVKKAK*
Ga0114340_100717513	F022414	AGGCGG	MSKTTEIKLAEQIANLTDDHWFNPAIFGRYLAEQPIYTIDRIMEMVAYIISEQAKTYQVQKVRGTSSEGLLLANELNECIKAYQEVNVINNLTLPKPTVYHTKREVKVEPKQYGWTDEDKNPFDQV*
Ga0114340_10071752	F000714	N/A	VEDATIPYTDSPLPTEEEKMETTETSTVTVPDTYNPNLLVTYKVIRGYSDAEYATDKVTSIEWDLHNARQAQKTNAVLQDKINHAKDIIAEAYPDSGDQDTLRAIAEALGIELTRTIEFTATIEVSGTVEVDLLEDYELEDDIADNLYVDSQSGRIEIGDIEVCHVREA*
Ga0114340_10071754	F001043	GGAG	MSDYKDGFQDGYKFAREEIMEKLSEIDIADIDTWILDRLAEMIEGGSL*
Ga0114340_10071756	F001125	GGCGG	MGDRANFGFKDRKGDTIFLYGHWAGHRMLENLADAVSAAESRWDDETYATRIAISNLINDEWKSTTGWGISVNQLADNEHKVPIINWSAKTFTLMEEDLQTEVFSLPLAGFVSKYSSQSVMV*
Ga0114340_10071759	F021288	AGGAG	MLGYTQKDLADMTYGVYQADLLVNADENPAIHNYLVMAHDFLQGLWAEGYFDHAN*